feat(migrate): add export clerk and export supabase, and import by export run ID

[royanger]

PR 6 of 13 for clerk migrate (plan: slice-prs.md on #479). Stacked on #515: review that first, then this one, which shows only its own diff. It adds exports from Clerk and Supabase, and importing by export run ID. Still behind CLERK_EXPERIMENTAL=migrate.

Try it

CLERK_EXPERIMENTAL=migrate clerk migrate export clerk --app <app> --instance dev
CLERK_EXPERIMENTAL=migrate clerk migrate export supabase --db-url "$SUPABASE_DB_URL"
CLERK_EXPERIMENTAL=migrate clerk migrate import <export-run-id> --dry-run

What it does

• export clerk pages a whole instance through GET /v1/users, oldest first.
• export supabase reads auth.users through --db-url, SUPABASE_DB_URL, or a prompt.
• Each export is a run. Its export.json wraps the users in an envelope that names the source, so import <export-run-id> needs no file or --source.
• .gitignore gains exports/ and *service-account*.json. scripts/check-bun-version.ts gains the MySQL note.

Reviewing

Ported from #479 at 7a820406. New files match #479, trimmed to Clerk and Supabase: export/index.ts, export/registry.ts, lib/db.ts (DbPlatform is "supabase" only; 4d and 4e add theirs). The envelope branch in transform.ts still runs rows through assertUserRows.

Not ported: NETWORK_UNREACHABLE and the describeBapiTarget wording ship as separate small PRs, so one input-retry test uses a plain CliError, and one export clerk test no longer asserts keySource.

Tests

• bun run test covers the unit and integration tests.
• The live slice suite (pnpm test:migrate:slice3 in migration-test-apps) exports from the real Clerk and Supabase test apps and imports into a dev instance.

🤖 Generated with Claude Code

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🦋 Changeset detected

Latest commit: 9da0cfa

The changes in this PR will be included in the next version bump.

This PR includes changesets to release 1 package

Name	Type
clerk	Minor

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📝 Walkthrough

The migration CLI adds Clerk and Supabase export commands. Clerk exports users through the API, and Supabase exports users from auth.users through database clients. Exports write versioned files and record export runs. Imports accept files or export-run IDs, infer sources from export envelopes, and check file hashes during processing. The changes also add credential retry handling, database error redaction, export reporting, tests, and documentation.

Priority: ➖ Normal

Estimated code review effort: 4 (Complex) | ~60 minutes

Merge Risk: 🟡 Moderate · up to 9da0c

Large Supabase exports may exhaust memory, and exports written to permissive Windows directories may expose sensitive user data. Address or explicitly accept these risks before merging.

Pre-merge checks: 4 · 1

Failed checks: 1 warning

Check name	Status	Explanation	Resolution
Docstring Coverage		Docstring coverage is 73.42% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 79 functions across 29 files.	Write docstrings for the functions missing them to satisfy the coverage threshold.

Passed checks: 4 passed

Check name	Status	Explanation
Title check		The title clearly and concisely summarizes the main changes: adding Clerk and Supabase exports and supporting imports by export run ID.
Description check		The description directly explains the export commands, export-run import flow, configuration, testing, and scope of the changes.
Linked Issues check		Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check		Check skipped because no linked issues were found for this pull request.

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Review comments at @packages/cli-core/src/commands/migrate/export/shared.ts:
- Around line 60-65: Update writeExportFile to call fs.chmodSync(file, 0o600)
after writing the export so existing files also receive owner-only permissions.

Review comments at @packages/cli-core/src/commands/migrate/lib/db.ts:
- Around line 18-19: Update the build configuration for @clerk/cli-core so its
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- Around line 171-184: Add a 30-second timeout signal to the libsql fetch call
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• packages/cli-core/src/commands/migrate/export/clerk.test.ts
• packages/cli-core/src/commands/migrate/export/clerk.ts
• packages/cli-core/src/commands/migrate/export/db-exports.test.ts
• packages/cli-core/src/commands/migrate/export/db-options.ts
• packages/cli-core/src/commands/migrate/export/index.ts
• packages/cli-core/src/commands/migrate/export/registry.test.ts
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• packages/cli-core/src/commands/migrate/export/supabase.ts
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🟡 Minor · Set the output mode before writing the export. · shared.ts:50-66

packages/cli-core/src/commands/migrate/export/shared.ts:50-66
🔒 Security & Privacy | 🟡 Minor | ⚡ Quick win

Set the output mode before writing the export.

When --output names an existing permissive file, fs.writeFileSync replaces its contents before fs.chmodSync changes the mode. A concurrent local reader can access the exported data during that window. An interrupted or failed write can also leave the file permissive.

Open the file without truncating it, apply fchmodSync(file descriptor, 0o600), then truncate and write it.

Suggested fix

   // Password hashes, PII and a Firebase signer key: owner-only.
   fs.mkdirSync(path.dirname(file), { recursive: true, mode: 0o700 });
-  fs.writeFileSync(file, JSON.stringify(envelope, null, 2), { mode: 0o600 });
-  // `mode` only applies on create; an existing `--output` keeps its own.
-  fs.chmodSync(file, 0o600);
+  const fd = fs.openSync(file, "a+", 0o600);
+  try {
+    fs.fchmodSync(fd, 0o600);
+    fs.ftruncateSync(fd, 0);
+    fs.writeFileSync(fd, JSON.stringify(envelope, null, 2));
+  } finally {
+    fs.closeSync(fd);
+  }
   return file;

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Review comment at @packages/cli-core/src/commands/migrate/export/shared.ts
around lines 50 - 66:
Update writeExportFile to secure the file before replacing its contents: open it
without truncation, set its mode to owner-only through the file descriptor, then
truncate and write the export. Ensure the descriptor is closed on success or
failure.

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Inline comments:
Review comments at @packages/cli-core/src/commands/migrate/run.ts:
- Line 302: Before returning the recorded export from this branch, validate that
the current file hash matches record.file.sha256 and that the envelope’s runId
and source match the recorded run. Reject the export if any of these checks
fail; preserve the existing return behavior for verified records.

---

Outside diff comments:
Review comments at @packages/cli-core/src/commands/migrate/export/shared.ts:
- Around line 50-66: Update writeExportFile to secure the file before replacing
its contents: open it without truncation, set its mode to owner-only through the
file descriptor, then truncate and write the export. Ensure the descriptor is
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🟡 Minor · Record the export link when continuing an import. · run.ts:866

packages/cli-core/src/commands/migrate/run.ts:866
🔒 Security & Privacy | 🟡 Minor | ⚡ Quick win

Record the export link when continuing an import.

If a partial import started from a file path, then continues by export run ID, findResume selects the existing import record. This assignment runs only for a new record, so the continued record lacks fromExport. cleanupLines then omits the instruction to delete the export containing user data. Update the continued record with the originating export ID.

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Review comment at @packages/cli-core/src/commands/migrate/run.ts at line 866:
Update the import continuation flow around findResume so a resumed import record
also stores the originating export ID from input.fromExport, rather than
assigning it only when creating a new record; ensure cleanupLines can use that
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Review comments at @packages/cli-core/src/commands/migrate/run.ts:
- Line 311: Keep run-ID validation in the resume flow tied to the contents later
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recheck the export record’s hash immediately before creating any users. Ensure
`run` cannot import overwritten file contents under the original export run ID.

---

Outside diff comments:
Review comments at @packages/cli-core/src/commands/migrate/run.ts:
- Line 866: Update the import continuation flow around findResume so a resumed
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- Around line 707-709: Recheck the recorded export hash after the
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🟡 Minor · Link completed imports to the export run before returning. · run.ts:815-823

packages/cli-core/src/commands/migrate/run.ts:815-823
🗄️ Data Integrity & Integration | 🟡 Minor | ⚡ Quick win

Link completed imports to the export run before returning.

When a completed path-based import is invoked by its export run ID, findResume returns kind: "complete". This branch returns before continueWithExport records fromExport and before cleanupLines runs. The command therefore omits the cleanup instructions for the export file and its external copy, and the completed import record does not identify the export run.

Handle this completed case separately from interrupted and partial continuations: persist fromExport on resume.record, then emit cleanupLines for the completed record.

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Review comment at @packages/cli-core/src/commands/migrate/run.ts around lines
815 - 823:
In the `resume.kind === "complete"` branch, persist the export run ID as
`fromExport` on `resume.record` and emit `cleanupLines` for that completed
record before returning. Keep this handling separate from interrupted and
partial continuation paths.

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Outside diff comments:
Review comments at @packages/cli-core/src/commands/migrate/run.ts:
- Around line 815-823: In the `resume.kind === "complete"` branch, persist the
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that completed record before returning. Keep this handling separate from
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@coderabbitai Re the outside-diff comment on run.ts:815-823 (link completed imports to the export run before returning): fixed in 9da0cfa. When findResume returns complete and the import was named by an export run ID that the record doesn't carry yet, the run's own record gets fromExport through patchRun, which touches only run.json, not Clerk. The "Already imported" output then prints the cleanup lines, and --json returns the patched record. Test: a run finished by path, re-run by export run ID, records fromExport and names the export in its cleanup. It fails without the fix.

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set -euo pipefail
base=packages/cli-core/src/commands/migrate
ast-grep outline "$base/run.ts" --match 'runMigration|cleanupLines' --view expanded
ast-grep outline "$base/run.test.ts" --match 'export|complete|finished' 
rg -n -C18 'resume\.kind === "complete"|resume\.status === "complete"|Already imported|patchRun' "$base/run.ts"
rg -n -C22 'finished by path|completed.*export|complete.*export|re-run|rerun|already imported|Already imported' "$base/run.test.ts"
rg -n -C10 'function patchRun|const patchRun\s*=' --type ts .

Length of output: 16644

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@royanger Thanks. I checked the completed-import branch and the regression test assertions. This finding is addressed.

• Before returning, the branch calls patchRun when the record needs the fromExport link.
• The “Already imported” output prints cleanupLines for the updated record.
• --json returns the updated record.
• The regression test checks that an import completed by path gains fromExport when invoked by export run ID. It also checks the cleanup message naming the export.

I did not run the tests.

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