Skip to content
Closed
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
17 changes: 17 additions & 0 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -161,6 +161,23 @@ RUN curl -fsSL https://github.com/nextstrain/nextclade/releases/download/2.14.0/
RUN curl -fsSL https://github.com/nextstrain/nextclade/releases/download/2.14.0/nextclade-$(/builder-scripts/target-triple) \
-o /final/bin/nextclade2

# Download TreeTime v1 as treetime1
# TreeTime v1 is a rewrite of TreeTime as a standalone executable. It does not
# replace TreeTime v0 (the phylo-treetime Python package below), which provides
# the `treetime` command and which Augur imports. Workflows opt in by calling
# treetime1. Releases are nightly builds until TreeTime v1 is released; the
# checksums come from the SHA256SUMS file of the pinned release.
ARG TREETIME1_VERSION=1.0.0-nightly.20261026T130313Z+8513a64
RUN target="$(/builder-scripts/target-triple)" \
&& case "$target" in \
x86_64-unknown-linux-gnu) sha256=786ff42ef8f7ad8a854e3c5e280b2d63b98a28cb5565a86977a11de7c31f483a ;; \
aarch64-unknown-linux-gnu) sha256=3143bea5acd31abaa28eea9b95f07a5f15bad195f1cd0484284e1962067c8859 ;; \
*) echo "No TreeTime v1 checksum for $target" >&2; exit 1 ;; \
esac \
&& curl -fsSL "https://github.com/neherlab/treetime-nightly/releases/download/${TREETIME1_VERSION}/treetime-${target}" \
-o /final/bin/treetime1 \
&& echo "$sha256 /final/bin/treetime1" | sha256sum --check --strict

# Download tsv-utils
# NOTE: Running this program requires support for emulation on the Docker host
# if the processor architecture is not amd64.
Expand Down
1 change: 1 addition & 0 deletions devel/validate-platforms
Original file line number Diff line number Diff line change
Expand Up @@ -55,6 +55,7 @@ main() {
nextstrain --version
nextalign --version
nextclade --version
treetime1 --version
augur --version
auspice --version
python3 -c "from importlib.metadata import version; print(version(\"evofr\"))"
Expand Down
Loading