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8 changes: 8 additions & 0 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -195,6 +195,14 @@ RUN curl -fsSL https://github.com/nextstrain/nextclade/releases/latest/download/
-o /final/bin/nextclade3 \
&& ln -sv nextclade3 /final/bin/nextclade

# Download TreeTime v1 as treetime1
# TreeTime v1 is a rewrite of TreeTime as a standalone executable. It does not
# replace TreeTime v0 (the phylo-treetime Python package below), which provides
# the `treetime` command and which Augur imports. Workflows opt in by calling
# treetime1. Until TreeTime v1 is released, this is the latest nightly build.
RUN curl -fsSL https://github.com/neherlab/treetime-nightly/releases/latest/download/treetime-$(/builder-scripts/target-triple) \
-o /final/bin/treetime1

# Auspice
# Building auspice means we can run it without hot-reloading, which is
# time-consuming and generally unnecessary in the container image.
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1 change: 1 addition & 0 deletions devel/validate-platforms
Original file line number Diff line number Diff line change
Expand Up @@ -55,6 +55,7 @@ main() {
nextstrain --version
nextalign --version
nextclade --version
treetime1 --version
augur --version
auspice --version
python3 -c "from importlib.metadata import version; print(version(\"evofr\"))"
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