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Zip Store - #37

Merged

brokkoli71 merged 68 commits into

mainfrom

zip-store

Jan 30, 2026

Commits on Dec 18, 2025
- add ZipStore tests
  brokkoli71
  committed
  8e79825
- refactor and unify outputs of Store.list
  brokkoli71
  committed
  2611738
- read zip store
  brokkoli71
  committed
  5e2e017
- Bump to 0.0.6 to trigger release
  
  joshmoore
  authored and
  brokkoli71
  committed
  4a9f7f0
- Bump to 0.0.7
  
  joshmoore
  authored and
  brokkoli71
  committed
  99081e5
- Bump to 0.0.8
  
  joshmoore
  authored and
  brokkoli71
  committed
  268890e
- Bump to 0.0.9
  
  joshmoore
  authored and
  brokkoli71
  committed
  b9e6db4
- write buffer of zip store
  brokkoli71
  committed
  08afc36
- use apache commons compress for zip file read and write
  brokkoli71
  committed
  0cacc5b
- set Zip64Mode.AsNeeded
  brokkoli71
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  5b74372
- test Zipped OME-Zarr requirements
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  committed
  ee92e27
- Sort zarr.json files in breadth-first order within BufferedZipStore
  brokkoli71
  committed
  a344655
- manually read zip comment
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  committed
  ea16692
- refactor read zip comment
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  committed
  7e0164f
- test zip store with v2
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  committed
  02445e0
- use com.fasterxml.jackson.databind.util.ByteBufferBackedInputStream instead of own implementation
  brokkoli71
  committed
  caafad0
- add ReadOnlyZipStore
  brokkoli71
  committed
  dbc559c
- fix ReadOnlyZipStore for zips with
  brokkoli71
  committed
  db57be7
- add BufferedZipStore parameter flushOnWrite
  brokkoli71
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  768bd62
- fix testMemoryStore
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  38bec27
- default flushOnWrite to false
  brokkoli71
  committed
  bdcbc46
- fix s3 store get range
  brokkoli71
  committed
  9014fef
- add store.getInputStream
  brokkoli71
  committed
  5c74445
- add store.getSize
  brokkoli71
  committed
  7e0e90e
- improve performance of ReadOnlyZipStore.getArchiveComment
  brokkoli71
  committed
  086d3f8
- inherit zipstores from common parent and reduce buffers in memory in loadBuffer
  brokkoli71
  committed
  7d4f487
Commits on Jan 5, 2026
- Merge branch 'main' into zip-store
  brokkoli71
  committed
  ca88fb5
- fix s3 test buckets
  brokkoli71
  committed
  72ef229
- reduce getArchiveComment store requests
  brokkoli71
  committed
  e8fb440
- Merge branch 'main' into zip-store
  brokkoli71
  committed
  2927ca7
- format
  brokkoli71
  committed
  8b390bc
- fix merge
  brokkoli71
  committed
  7b064c8
Commits on Jan 11, 2026
- improve Group::list performance
  brokkoli71
  committed
  d98767c
- fix ReadOnlyZipStore::list
  brokkoli71
  committed
  e4514b2
- less requests to store on read
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  committed
  76aacb8
- fix FilesystemStore::list
  brokkoli71
  committed
  60e11d7
- fix MemoryStore::list
  brokkoli71
  committed
  cd349f9
- fix ReadOnlyZipStore::list
  brokkoli71
  committed
  a1c54ea
- test Store::list for local stores
  brokkoli71
  committed
  a2aef00
Commits on Jan 12, 2026
- less store.exists() for v2.Group.list()
  brokkoli71
  committed
  4f7bee8
- add S3Mock for tests
  brokkoli71
  committed
  60e28cd
- fallback to chunkHandle.exists() for non listable stores
  brokkoli71
  committed
  51d0f36
- fix ZarrV2Test::testGroup
  brokkoli71
  committed
  b309922
- downgrade s3mock version to match java-version 11
  brokkoli71
  committed
  cac3e22
- downgrade s3mock version to match java-version 11
  brokkoli71
  committed
  8d5d583
Commits on Jan 16, 2026
- run S3 Mock with docker
  brokkoli71
  committed
  c64ea1c
- S3Mock tests only on linux
  brokkoli71
  committed
  55d5475
- fix ZarrV3Test::testGroup for windows, mac
  brokkoli71
  committed
  5ae5ac2
- refactor and add missing store tests
  brokkoli71
  committed
  8c4e988
- fix s3Store::list
  brokkoli71
  committed
  4e4f1e8
- fix ReadOnlyZipStore::list
  brokkoli71
  committed
  8d64385
- add tests
  brokkoli71
  committed
  78c0e3a
- fix tests with path collision
  brokkoli71
  committed
  9b73829
Commits on Jan 19, 2026
- reformat code
  brokkoli71
  committed
  77060de
- improve httpStore testing
  brokkoli71
  committed
  2e048f7
- change store::list to list no directories
  brokkoli71
  committed
  a1e3601
- adjust test for store::list
  brokkoli71
  committed
  ffd5deb
- test store::exist, list, listChildren
  brokkoli71
  committed
  4f80830
- test store::get with start and end
  brokkoli71
  committed
  82e0ef3
- test store::delete
  brokkoli71
  committed
  2897f0a
Commits on Jan 23, 2026
- fix ReadOnlyZipStoreTest.testReadFromBufferedZipStore and S3StoreTest>StoreTest.testExists
  brokkoli71
  committed
  91e5e3d
- fix S3StoreTest.testList
  brokkoli71
  committed
  933f58b
- test store.get with start argument
  brokkoli71
  committed
  52de5f4
Commits on Jan 26, 2026
- BufferedZipStore auto closable
  brokkoli71
  committed
  ed17059
- s3 tests opt-in instead of opt-out
  brokkoli71
  committed
  bf52f26
- cache key existence and sizes in ReadOnlyZipStore
  brokkoli71
  committed
  2c7541f
- remove listing existingKeys from array read
  brokkoli71
  committed
  563647f
- Merge branch 'main' into zip-store
  brokkoli71
  authored
  2470f30

Commits

Commits on Dec 18, 2025

Commits on Jan 5, 2026

Commits on Jan 11, 2026

Commits on Jan 12, 2026

Commits on Jan 16, 2026

Commits on Jan 19, 2026

Commits on Jan 23, 2026

Commits on Jan 26, 2026