Calculation of interatomic interactions in molecular structures
A Nextflow pipeline for end-to-end long-read proteogenomics analysis
A Python package that aims to characterise the dynamics of local chemical environments from Molecular Dynamics trajectories of proteins and other biomolecules. Public mirror of https://gitlab.jsc.fz-juelich.de/slbio/speadi.
Topological data analytic approach for discovering biophysical signatures in protein dynamics
protclust is a Python library for protein sequence analysis that integrates MMseqs2 for fast clustering and provides tools for creating robust machine learning datasets. It offers cluster-aware data splitting to prevent sequence similarity bias in model evaluation, along with comprehensive protein embedding capabilities for feature generation.
Reproducible comparative genomics study investigating human TP53 cancer mutation hotspots across elephant TP53-related sequences, integrating sequence conservation, phylogenetic analysis, computational prioritization, and research software to explore evolutionary conservation of cancer-associated residues.
Superposition-based Protein Embedded CA SC score
Faster, Friendlier Protein Analysis in ChimeraX for everyone
Stand Alone version of ConSurf with better amino acid analysis - (installation + database + usage + analysis) - Fork of leezx/ConSurf-StandAlone
PRO-LIFE is a research-oriented platform for protein structure and sequence analysis. It ingests 3D protein coordinates and PDB data, computes geometry metrics with a high-performance C++ engine, visualizes structures in the browser, and provides a baseline machine-learning workflow for ranking candidate protein sequences.
Bioinformatics analysis of adenovirus E1A proteins using Python, Biopython, LocalCIDER and AIUPred.
Per-taxonomy BLASTP search tool for balanced sequence retrieval from NCBI
🧬 AI-powered protein structure-function analysis tool with 8-state secondary structure prediction, functional region identification, and interactive visualization. Built for researchers, educators, and students to understand how protein structure drives biological function.
Research-oriented bioinformatics toolkit for protein sequence analysis using Python.
RATISS - Professional Medical Analysis & Validation Portfolio (p53 Protein)
Python tool for analyzing protein point mutations. Calculates changes in molecular weight, charge, and hydrophobicity. Classifies mutations by severity and generates visualizations and HTML reports.
Agent skill for protein multiple sequence alignment (MSA) via EMBL-EBI Clustal Omega, Shannon entropy conservation analysis, functional site coordinate projection, and interactive HTML5 dashboard visualization.
🧬Protein Functions Prediction through Amino Acids Sequences🧬
ParylationPredictor — predict PARylation sites and detect PAR-binding domains in proteins. Publication-quality 8-panel figures, Excel, HTML report, JSON/TSV exports.
A Bioinformatics Web Application for Protein Sequence Analysis built with Python, Biopython and Streamlit.
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