hfq

Here are 3 public repositories matching this topic...

Carlo-Broschi / bio-a_hfq-phylogenetics

Rooted, dual-method (ML + Bayesian) phylogeny of the bacterial Hfq family, with archaeal SmAP outgroup rooting and ESMFold/Foldseek structural verification

bioinformatics phylogenetics molecular-evolution maximum-likelihood iq-tree mrbayes foldseek esmfold hfq sm-lsm bayesian-phylogenetics

Updated Jul 9, 2026
Python

Carlo-Broschi / bio-b_sm-lsm-phylogenetics

Star

Structure-informed phylogenomic census of the Sm/Lsm/Hfq superfamily: DPANN/Asgard archaea retain the Sm fold while the bacterial CPR radiation has lost it

bioinformatics phylogenetics molecular-evolution iq-tree mrbayes cpr hfq sm-lsm dpann asgard-archaea bayesian-phylogenetics

Updated Jul 9, 2026
Python

Carlo-Broschi / bio-c_sm-fold-genome-reduction

Star

The fate of the Sm fold under genome reduction: a structure-informed three-domain phylogeny showing repeated bacterial Hfq loss vs archaeal Sm/Lsm retention

bioinformatics phylogenetics molecular-evolution iq-tree mrbayes esmfold endosymbiont genome-reduction hfq sm-lsm dpann bayesian-phylogenetics

Updated Jul 9, 2026
Python

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