fix(cli, docs): Refactor and enhance approximation modules and CLI support - #380
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Add project scaffolding, pinned dependency builds, on-demand rebuilds, compiled-output resolution, diagnostics, and documentation for custom dataflow approximations.
Three defects found by the model in formal/Opentaint/Cli/Internal/Approximation, each with the test the proof predicts. A directory counted as compiled classes as soon as a .class file existed anywhere below it. That is a test of the subtree, not a classification of the directory: a tree holding both a model project and compiled classes collapsed to one classpath root, the project was never compiled, and the scan ran without its models and reported nothing about it. Classify only when nothing below still needs building, and compute both facts in one walk rather than two (Resolve.fixed_loses_nothing, Resolve.shipped_loses_a_project, Resolve.fused_resolves_identically). A directory holding compiled classes of its own next to a project has no valid classification at all, so report it by name instead of dropping either side (Resolve.ambiguous_tree_drops_a_class). Builds staged in a directory named after the output alone, so two builders of one project shared it: one could delete the other's classes, contribute to them, and publish the mixture under a stamp recording it as up to date. Stage under a path carrying the builder's identity, and rename the previous output aside rather than deleting it, so a reader sees the old output, the new one, or nothing (Build.raceA_output_is_not_sound, Build.publishedOutputIsSound). The rebuild stamp digested the model project but not the compiler that reads it, so an upgraded CLI kept serving models compiled by the previous one. Carry the autobuilder's identity in the stamp (Stamp.shipped_stamp_serves_a_stale_output, Stamp.full_stamp_covers).
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