Regenie supported file types (Plink, Plink2, bgen) do not support structural variants. Could vcf or bcf support be added to allow Regenie to read and analyze SVs calls from graphtyper and other SV genotyping tools? This would also be useful for Long Read Sequencing generated pVCFs.
Regenie supported file types (Plink, Plink2, bgen) do not support structural variants. Could vcf or bcf support be added to allow Regenie to read and analyze SVs calls from graphtyper and other SV genotyping tools? This would also be useful for Long Read Sequencing generated pVCFs.