Nightly lowest dependencies notebooks tests failed (ubuntu-latest Python 3.11) #1012

examples/notebooks/battery_parameterisation/echem_identification_pitfalls.ipynb::echem_identification_pitfalls.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
Cell In[1], line 2
      1 import numpy as np
----> 2 import pybamm
      3 
      4 import pybop
      5 

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/pybamm/__init__.py:180
    178 from .solvers.solution import Solution, EmptySolution, make_cycle_solution
    179 from .solvers.processed_variable_time_integral import ProcessedVariableTimeIntegral
--> 180 from .solvers.processed_variable import ProcessedVariable, ProcessedVariable2DFVM, process_variable
    181 from .solvers.processed_variable_computed import ProcessedVariableComputed
    182 from .solvers.processed_variable import ProcessedVariableUnstructured

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/pybamm/solvers/processed_variable.py:5
      3 import casadi
      4 import numpy as np
----> 5 import xarray as xr
      6 from pybammsolvers import idaklu
      8 import pybamm

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/xarray/__init__.py:3
      1 from importlib.metadata import version as _version
----> 3 from xarray import coders, groupers, indexes, testing, tutorial, ufuncs
      4 from xarray.backends.api import (
      5     load_dataarray,
      6     load_dataset,
   (...)     12     open_mfdataset,
     13 )
     14 from xarray.backends.writers import save_mfdataset

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/xarray/coders.py:6
      1 """
      2 This module provides coder objects that encapsulate the
      3 "encoding/decoding" process.
      4 """
----> 6 from xarray.coding.times import CFDatetimeCoder, CFTimedeltaCoder
      8 __all__ = ["CFDatetimeCoder", "CFTimedeltaCoder"]

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/xarray/coding/times.py:15
     12 import pandas as pd
     13 from pandas.errors import OutOfBoundsDatetime, OutOfBoundsTimedelta
---> 15 from xarray.coding.common import (
     16     SerializationWarning,
     17     VariableCoder,
     18     lazy_elemwise_func,
     19     pop_to,
     20     safe_setitem,
     21     unpack_for_decoding,
     22     unpack_for_encoding,
     23 )
     24 from xarray.compat.pdcompat import default_precision_timestamp
     25 from xarray.core import indexing

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/xarray/coding/common.py:8
      4 from typing import TYPE_CHECKING, Any, Union
      6 import numpy as np
----> 8 from xarray.core import indexing
      9 from xarray.core.variable import Variable
     10 from xarray.namedarray.parallelcompat import get_chunked_array_type

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/xarray/core/indexing.py:20
     17 from packaging.version import Version
     19 from xarray.compat.npcompat import HAS_STRING_DTYPE
---> 20 from xarray.core import duck_array_ops
     21 from xarray.core.coordinate_transform import CoordinateTransform
     22 from xarray.core.nputils import NumpyVIndexAdapter

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/xarray/core/duck_array_ops.py:27
     19 import pandas as pd
     20 from numpy import (
     21     isclose,
     22     isnat,
     23     take,
     24     unravel_index,  # noqa: F401
     25 )
---> 27 from xarray.compat import dask_array_compat, dask_array_ops
     28 from xarray.compat.array_api_compat import get_array_namespace
     29 from xarray.compat.npcompat import HAS_STRING_DTYPE

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/xarray/compat/dask_array_ops.py:8
      5 import numpy as np
      7 from xarray.compat.dask_array_compat import reshape_blockwise
----> 8 from xarray.core import dtypes, nputils
      9 from xarray.namedarray.parallelcompat import get_chunked_array_type
     12 def dask_rolling_wrapper(
     13     moving_func, a, window, min_count=None, axis=-1, input_dtype=None
     14 ):

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/xarray/core/nputils.py:16
     14 # remove once numpy 2.0 is the oldest supported version
     15 if module_available("numpy", minversion="2.0.0.dev0"):
---> 16     from numpy.lib.array_utils import (  # type: ignore[import-not-found,unused-ignore]
     17         normalize_axis_index,
     18     )
     19 else:
     20     from numpy.core.multiarray import (  # type: ignore[attr-defined,no-redef,unused-ignore]
     21         normalize_axis_index,
     22     )

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/numpy/lib/array_utils.py:1
----> 1 from ._array_utils_impl import (  # noqa: F401
      2     __all__,
      3     __doc__,
      4     byte_bounds,
      5     normalize_axis_index,
      6     normalize_axis_tuple,
      7 )

File ~/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/numpy/lib/_array_utils_impl.py:4
      1 """
      2 Miscellaneous utils.
      3 """
----> 4 from numpy._core import asarray
      5 from numpy._core.numeric import normalize_axis_index, normalize_axis_tuple
      6 from numpy._utils import set_module

ImportError: cannot import name 'asarray' from 'numpy._core' (/home/runner/work/PyBOP/PyBOP/.venv/lib/python3.11/site-packages/numpy/_core/__init__.py)
examples/notebooks/battery_parameterisation/ecm_monte_carlo_sampling.ipynb::ecm_monte_carlo_sampling.ipynb: ---------------------------------------------------------------------------
%pip install --upgrade pandas -q

import numpy as np
import pandas as pd
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/battery_parameterisation/ecm_multipulse_identification.ipynb::ecm_multipulse_identification.ipynb: ---------------------------------------------------------------------------
%pip install --upgrade openpyxl pandas -q

import numpy as np
import pandas as pd
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/battery_parameterisation/electrode_balancing.ipynb::electrode_balancing.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pandas as pd
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/battery_parameterisation/lgm50_pulse_validation.ipynb::lgm50_pulse_validation.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pandas as pd
import pybamm
from scipy.io import loadmat

import pybop

pybop.plot.use_backend("plotly")
go = pybop.plot.backends.PlotlyManager().go
pybop.plot.backends.PlotlyManager().pio.renderers.default = "notebook_connected"

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/battery_parameterisation/ecm_scipy_constraints.ipynb::ecm_scipy_constraints.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm
import scipy.optimize

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/battery_parameterisation/pouch_cell_identification.ipynb::pouch_cell_identification.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm

import pybop

pybop.plot.use_backend("plotly")
go = pybop.plot.backends.PlotlyManager().go
pybop.plot.backends.PlotlyManager().pio.renderers.default = "notebook_connected"

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/battery_parameterisation/sensitivity_analysis_hessian.ipynb::sensitivity_analysis_hessian.ipynb: ---------------------------------------------------------------------------
import matplotlib.pyplot as plt
import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/battery_parameterisation/sensitivity_analysis_salib.ipynb::sensitivity_analysis_salib.ipynb: ---------------------------------------------------------------------------
%pip install --upgrade openpyxl "pandas<=2.3.3" -q

import time

import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import pybamm
from pybamm import Parameter
from SALib.analyze import morris as morris_analyze
from SALib.analyze import sobol
from SALib.sample import morris as morris_sample
from SALib.sample import sobol as sobol_sample

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/comparison_examples/optimiser_calibration.ipynb::optimiser_calibration.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/comparison_examples/comparing_cost_functions.ipynb::comparing_cost_functions.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm

import pybop

pybop.plot.use_backend("plotly")
go = pybop.plot.backends.PlotlyManager().go
pybop.plot.backends.PlotlyManager().pio.renderers.default = "notebook_connected"

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/design_optimisation/energy_based_electrode_design.ipynb::energy_based_electrode_design.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm
from pybamm import Parameter

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/getting_started/cost_compute_methods.ipynb::cost_compute_methods.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/getting_started/creating_a_model.ipynb::creating_a_model.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/getting_started/maximum_a_posteriori.ipynb::maximum_a_posteriori.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/getting_started/optimising_with_adamw.ipynb::optimising_with_adamw.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/getting_started/plotting.ipynb::plotting.ipynb: ---------------------------------------------------------------------------
%pip install --upgrade SciencePlots -q

import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/getting_started/setting_optimiser_options.ipynb::setting_optimiser_options.ipynb: ---------------------------------------------------------------------------
import json

import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found
examples/notebooks/getting_started/using_transformations.ipynb::using_transformations.ipynb: ---------------------------------------------------------------------------
import numpy as np
import pybamm

import pybop

np.random.seed(8)  # users can remove this line
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
AttributeError: _ARRAY_API not found