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symphonypy

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Port of symphony algorithm of single-cell reference atlas mapping to Python

bioinformatics python scrna-seq

GPL-3.0 license

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Name		Name	Last commit message	Last commit date
.github/workflows		.github/workflows
benchmarking		benchmarking
docs		docs
notebooks		notebooks
symphonypy		symphonypy
tests		tests
.gitattributes		.gitattributes
.gitignore		.gitignore
.pylintrc		.pylintrc
.readthedocs.yaml		.readthedocs.yaml
LICENSE		LICENSE
README.md		README.md
pyproject.toml		pyproject.toml
setup.cfg		setup.cfg

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Symphonypy

Porting of Symphony R package to Python

Installation and usage
Benchmarking

Installation and usage

Please visit Read the Docs documentation web page.

Benchmarking

Harmony (R) vs Harmonypy benchmarking: benchmarking/Benchmarking_harmony_PBMC_Satija.ipynb
Symphony (R) vs Symphonypy benchmarking: benchmarking/Benchmarking_symphony_PBMC.ipynb

About

Port of symphony algorithm of single-cell reference atlas mapping to Python

bioinformatics python scrna-seq

GPL-3.0 license

36 stars

3 watching

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