Repositories list

• cogstack-platform

  Public
  Apps, tools and documentation for the cogstack platform

  documentationclouddeployment

  documentationclouddeployment

  Python

  •

  Other

  •22 forks in CogStack/cogstack-platform•33 stars in CogStack/cogstack-platform•00 issues in CogStack/cogstack-platform•11 pull request in CogStack/cogstack-platform•Updated Oct 26, 2026Oct 26, 2026

• ocr-service

  Public

  CogStack/ocr-service’s past year of commit activity
  This is a python fast-api OCR service, attempting to resolve scalability and performance issues. It also relies on tesseract ocr but without the ambiguities of…

  ocrscalabilitytesseract+ 1

  ocrscalabilitytesseractfast-api

  Python

  •

  Other

  •44 forks in CogStack/ocr-service•44 stars in CogStack/ocr-service•00 issues in CogStack/ocr-service•22 pull requests in CogStack/ocr-service•Updated Oct 24, 2026Oct 24, 2026

• CogStack-NiFi

  Public
  Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

  nlpelasticsearchautomation+ 9

  nlpelasticsearchautomationkibanarestetldata-integrationnifiapache-nifidata-pipelines+ 2

  Python

  •

  Other

  •2020 forks in CogStack/CogStack-NiFi•6161 stars in CogStack/CogStack-NiFi•00 issues in CogStack/CogStack-NiFi•44 pull requests in CogStack/CogStack-NiFi•Updated Oct 23, 2026Oct 23, 2026

• cogstack-nlp

  Public
  CogStack NLP, including the Medical Concept Annotation Tool MedCAT

  HTML

  •

  Apache License 2.0

  •1616 forks in CogStack/cogstack-nlp•8686 stars in CogStack/cogstack-nlp•00 issues in CogStack/cogstack-nlp•11 pull request in CogStack/cogstack-nlp•Updated Oct 23, 2026Oct 23, 2026

• dbt_mimic_omop

  Public
  A resource to convert the MIMIC-IV and MIMIC-IV note datasets into a standard OMOP format.

  Python

  •44 forks in CogStack/dbt_mimic_omop•66 stars in CogStack/dbt_mimic_omop•00 issues in CogStack/dbt_mimic_omop•00 pull requests in CogStack/dbt_mimic_omop•Updated Oct 22, 2026Oct 22, 2026

• cogstack-jupyter-hub

  Public archive
  Custom Jupyter Hub Docker image with example notebooks

  pythonanalyticsanalysis+ 2

  pythonanalyticsanalysisjupyter-notebookjupyterhub

  Python

  •

  Other

  •44 forks in CogStack/cogstack-jupyter-hub•22 stars in CogStack/cogstack-jupyter-hub•00 issues in CogStack/cogstack-jupyter-hub•11 pull request in CogStack/cogstack-jupyter-hub•Updated Oct 1, 2026Oct 1, 2026

• CogStack-ModelServe

  Public
  A model serving and governance system for CogStack NLP solutions

  Python

  •

  Apache License 2.0

  •44 forks in CogStack/CogStack-ModelServe•11 star in CogStack/CogStack-ModelServe•22 issues in CogStack/CogStack-ModelServe•33 pull requests in CogStack/CogStack-ModelServe•Updated Sep 28, 2026Sep 28, 2026

• cms-client

  Public
  SDKs for interacting with the CogStack ModelServe APIs

  Java

  •

  Apache License 2.0

  •00 forks in CogStack/cms-client•00 stars in CogStack/cms-client•00 issues in CogStack/cms-client•00 pull requests in CogStack/cms-client•Updated Jul 31, 2026Jul 31, 2026

• cogstack-model-gateway

  Public
  A Gateway for accessing Cogstack ModelServe instances

  Python

  •

  Apache License 2.0

  •22 forks in CogStack/cogstack-model-gateway•22 stars in CogStack/cogstack-model-gateway•66 issues in CogStack/cogstack-model-gateway•11 pull request in CogStack/cogstack-model-gateway•Updated Jul 29, 2026Jul 29, 2026

• fde-tech-task

  Public
  00 forks in CogStack/fde-tech-task•00 stars in CogStack/fde-tech-task•00 issues in CogStack/fde-tech-task•00 pull requests in CogStack/fde-tech-task•Updated Jul 17, 2026Jul 17, 2026

• CogStackCohort

  Public
  A MedCAT annotations retrieval tool for cohort identification

  JavaScript

  •66 forks in CogStack/CogStackCohort•22 stars in CogStack/CogStackCohort•00 issues in CogStack/CogStackCohort•00 pull requests in CogStack/CogStackCohort•Updated Feb 10, 2026Feb 10, 2026

• cogstack_dashboards_demo

  Public
  Demo scripts for CogStack Dashboards

  Python

  •

  Apache License 2.0

  •11 fork in CogStack/cogstack_dashboards_demo•00 stars in CogStack/cogstack_dashboards_demo•00 issues in CogStack/cogstack_dashboards_demo•00 pull requests in CogStack/cogstack_dashboards_demo•Updated Jan 2, 2026Jan 2, 2026

• working_with_cogstack

  Public
  Basic setup and easy to follow templates to interact and search CogStack for data analysts

  Python

  •

  Apache License 2.0

  •1010 forks in CogStack/working_with_cogstack•1212 stars in CogStack/working_with_cogstack•00 issues in CogStack/working_with_cogstack•11 pull request in CogStack/working_with_cogstack•Updated Sep 18, 2025Sep 18, 2025

• .github

  Public
  00 forks in CogStack/.github•00 stars in CogStack/.github•00 issues in CogStack/.github•00 pull requests in CogStack/.github•Updated Sep 5, 2025Sep 5, 2025

• MedCATtrainer

  Public archive
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.

  nlpmachine-learningsnomed+ 3

  nlpmachine-learningsnomedumlsactive-learningmedcat

  Python

  •

  Apache License 2.0

  •3636 forks in CogStack/MedCATtrainer•8585 stars in CogStack/MedCATtrainer•1818 issues in CogStack/MedCATtrainer•55 pull requests in CogStack/MedCATtrainer•Updated Sep 4, 2025Sep 4, 2025

• MedCATv2tutorials

  Public archive
  Tutorials for MedCATv2

  Jupyter Notebook

  •11 fork in CogStack/MedCATv2tutorials•22 stars in CogStack/MedCATv2tutorials•00 issues in CogStack/MedCATv2tutorials•00 pull requests in CogStack/MedCATv2tutorials•Updated Jul 31, 2025Jul 31, 2025

• MedCAT

  Public archive
  Medical Concept Annotation Tool

  nlpnatural-language-processinginformation-extraction+ 8

  nlpnatural-language-processinginformation-extractionhealthcarelearnsnomednercollaborateumlselectronic-health-records+ 1

  Python

  •

  Apache License 2.0

  •121121 forks in CogStack/MedCAT•531531 stars in CogStack/MedCAT•00 issues in CogStack/MedCAT•11 pull request in CogStack/MedCAT•Updated Jul 25, 2025Jul 25, 2025

• MedCAT2

  Public archive
  MedCATv2

  nlpepr

  nlpepr

  Python

  •

  Other

  •11 fork in CogStack/MedCAT2•77 stars in CogStack/MedCAT2•00 issues in CogStack/MedCAT2•11 pull request in CogStack/MedCAT2•Updated Jun 25, 2025Jun 25, 2025

• MedCATservice

  Public archive
  Running MedCAT as a RESTful web service

  pythonnlpdocker+ 6

  pythonnlpdockerflaskmicroservicesrestspacysnomedumls

  Python

  •

  Other

  •1616 forks in CogStack/MedCATservice•2222 stars in CogStack/MedCATservice•00 issues in CogStack/MedCATservice•00 pull requests in CogStack/MedCATservice•Updated Jun 23, 2025Jun 23, 2025

• MedCATdemowebapp

  Public archive
  Demo web app for MedCAT

  Python

  •11 fork in CogStack/MedCATdemowebapp•00 stars in CogStack/MedCATdemowebapp•00 issues in CogStack/MedCATdemowebapp•11 pull request in CogStack/MedCATdemowebapp•Updated Jun 20, 2025Jun 20, 2025

• Foresight

  Public
  Deep Generative Modelling of Patient Timelines using Electronic Health Records

  Jupyter Notebook

  •

  Apache License 2.0

  •1515 forks in CogStack/Foresight•7777 stars in CogStack/Foresight•22 issues in CogStack/Foresight•11 pull request in CogStack/Foresight•Updated Jun 17, 2025Jun 17, 2025

• MedCATtutorials

  Public
  General tutorials for the setup and use of MedCAT.

  natural-language-processingelectronic-health-recordsclinical-data

  natural-language-processingelectronic-health-recordsclinical-data

  HTML

  •

  MIT License

  •1717 forks in CogStack/MedCATtutorials•4141 stars in CogStack/MedCATtutorials•11 issue in CogStack/MedCATtutorials•11 pull request in CogStack/MedCATtutorials•Updated May 22, 2025May 22, 2025

• text-2-sql

  Public
  Python

  •11 fork in CogStack/text-2-sql•00 stars in CogStack/text-2-sql•00 issues in CogStack/text-2-sql•00 pull requests in CogStack/text-2-sql•Updated Apr 7, 2025Apr 7, 2025

• AnonCATDemo

  Public archive
  The Deidentify app uses MedCAT to automatically redact or replace sensitive information in documents. Customisable rules and batch processing make it easy to ha…

  Vue

  •

  Apache License 2.0

  •44 forks in CogStack/AnonCATDemo•22 stars in CogStack/AnonCATDemo•00 issues in CogStack/AnonCATDemo•00 pull requests in CogStack/AnonCATDemo•Updated Apr 12, 2024Apr 12, 2024

• OpenGPT

  Public
  A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).

  nlpmedicinehealth+ 6

  nlpmedicinehealthhealthcarehuggingfaceopengptgpt-4llmchatgpt

  Jupyter Notebook

  •

  Apache License 2.0

  •4545 forks in CogStack/OpenGPT•372372 stars in CogStack/OpenGPT•33 issues in CogStack/OpenGPT•22 pull requests in CogStack/OpenGPT•Updated May 30, 2023May 30, 2023

• iCAT

  Public
  A docker container for CogStack/MedCAT/HuggingFace development in isolated environments.

  Vim Script

  •44 forks in CogStack/iCAT•33 stars in CogStack/iCAT•00 issues in CogStack/iCAT•22 pull requests in CogStack/iCAT•Updated May 22, 2023May 22, 2023

• tika-service

  Public
  Apache Tika running as a web service

  Java

  •

  Apache License 2.0

  •66 forks in CogStack/tika-service•1818 stars in CogStack/tika-service•11 issue in CogStack/tika-service•00 pull requests in CogStack/tika-service•Updated Jan 14, 2023Jan 14, 2023

• nlp2phenome

  Public archive
  using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)

  nlpmachine-learningehr-phenotyping

  nlpmachine-learningehr-phenotyping

  Python

  •33 forks in CogStack/nlp2phenome•1010 stars in CogStack/nlp2phenome•22 issues in CogStack/nlp2phenome•44 pull requests in CogStack/nlp2phenome•Updated Jan 13, 2023Jan 13, 2023

• CogStack-SemEHR

  Public archive
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

  semantic-webelectronic-health-recordumls+ 2

  semantic-webelectronic-health-recordumlssemantic-querysemantic-annotation

  JavaScript

  •

  Apache License 2.0

  •2222 forks in CogStack/CogStack-SemEHR•9090 stars in CogStack/CogStack-SemEHR•33 issues in CogStack/CogStack-SemEHR•00 pull requests in CogStack/CogStack-SemEHR•Updated Jan 13, 2023Jan 13, 2023

• risk-score-builder

  Public archive
  Map clinical risk score concepts to structured definitions using ontologies, calculate structured risk scores from NLP.

  Python

  •

  GNU General Public License v3.0

  •33 forks in CogStack/risk-score-builder•66 stars in CogStack/risk-score-builder•11 issue in CogStack/risk-score-builder•00 pull requests in CogStack/risk-score-builder•Updated Jan 13, 2023Jan 13, 2023