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@BiRG Data Science and Bioinformatics Research Group

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    20 repositories

    • pyopls

      Public
      A Python 3 implementation of orthogonal projection to latent structures
      feature-selectionmetabolomicschemometrics
      feature-selectionmetabolomicschemometricspartial-least-squares-regressionorthogonal-signal-correction
      Python
      •
      MIT License
      •20•65•4•3•Updated Feb 22, 2024Feb 22, 2024

    • Omics-Dashboard

      Public
      A tool for managing (primarily numeric) multiomics data such as microarray data, spectroscopy, etc.
      Python
      •
      MIT License
      •0•2•0•0•Updated Oct 24, 2022Oct 24, 2022

    • locality-sensitive-deep-learner

      Public
      Deep learner with attention mechanism for locally-linear data
      Jupyter Notebook
      •0•1•0•0•Updated Aug 23, 2021Aug 23, 2021

    • jcamp

      Public
      A set of Python utilities for reading JCAMP-DX files.
      Python
      •
      MIT License
      •35•0•0•0•Updated Aug 21, 2020Aug 21, 2020

    • Omics-Dashboard-Python-Client

      Public
      A Python (3.4+ or 2.7) package for interfacing with an Omics Dashboard (https://github.com/BiRG/Omics-Dashboard) web service.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 15, 2020Jul 15, 2020

    • chemometrics-tools

      Public
      Assorted chemometric tools for internal use (primarily for NMR metabolomics).
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 20, 2020Mar 20, 2020

    • Metabolomics-Analysis-Toolbox

      Public archive
      MATLAB
      •0•4•43•0•Updated Oct 22, 2019Oct 22, 2019

    • cromwell-frontend

      Public archive
      A web front-end for the Cromwell job server, including authentication via PAM and rudimentary management of workflow definitions.
      Python
      •
      MIT License
      •0•5•0•0•Updated Sep 4, 2019Sep 4, 2019

    • Omics-Dashboard-MATLAB-Client

      Public
      A collection of MATLAB scripts for interfacing with an Omics Dashboard (https://github.com/BiRG/Omics-Dashboard) service.
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2019Aug 20, 2019

    • cwltool

      Public archive
      Common Workflow Language reference implementation
      Python
      •
      Apache License 2.0
      •240•0•0•0•Updated Aug 16, 2018Aug 16, 2018

    • slim-docker-images

      Public archive
      Minimized docker images for bioinformatics tools.
      0•0•0•0•Updated May 30, 2018May 30, 2018

    • atrc-pytorch

      Public archive
      Jupyter Notebook
      •5•0•0•0•Updated May 30, 2018May 30, 2018

    • metaboscribe

      Public archive
      JavaScript
      •0•0•0•0•Updated Mar 26, 2018Mar 26, 2018

    • PICNIC_revision

      Public archive
      Wright State University Bioinformatics Research Group PICNIC revision
      MATLAB
      •0•3•0•0•Updated Jun 24, 2013Jun 24, 2013

    • HomoloGenie

      Public archive
      An application for the study of Homologous Genes
      Ruby
      •0•0•0•0•Updated Mar 22, 2013Mar 22, 2013

    • Vertebrae

      Public archive
      A library for accessing the NCBI Entrez Database and Query System
      Ruby
      •0•0•0•0•Updated Feb 18, 2013Feb 18, 2013

    • Proteus

      Public archive
      JavaScript
      •0•0•0•0•Updated Jan 24, 2013Jan 24, 2013

    • Metabolomics-Laboratory-Information-and-Management-System

      Public archive
      Python
      •0•0•0•0•Updated Sep 22, 2011Sep 22, 2011

    • NMR-Training-and-Testing-Data-Sets

      Public archive
      Objective-C
      •0•1•0•0•Updated Sep 5, 2011Sep 5, 2011

    • Immune-System-Model

      Public archive
      Objective-C
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 26, 2011Apr 26, 2011
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