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Auto-updated markdown table of default resource requests in pipeline template

enhancement

Status: Open.

#4345 In nf-core/tools;

· jfy133 opened on Jun 24, 2026

Consider enforcing line feeds in .gitattributes

enhancement

Status: Open.

#4341 In nf-core/tools;

· lukekoch opened on Jun 23, 2026

Validate output files using the new output syntax in documentation

enhancement

Status: Open.

#4336 In nf-core/tools;

· FriederikeHanssen opened on Jun 18, 2026

Keep the citations file in sync with installed modules (nf-core/tools lint)

Status: Open.

#4328 In nf-core/tools;

· edmundmiller opened on Jun 16, 2026

Incorrect if-statement logic in nf-core modules test output

bugSomething isn't workingSomething isn't working

Status: Open.

#4327 In nf-core/tools;

· kcammel opened on Jun 16, 2026

Investigate reducing base container size for wave provisioned containers.

infrastructure

Status: Open.

Enhancement

#4315 In nf-core/tools;

· awgymer opened on Jun 5, 2026

Check for dead links in the template during linting

enhancement

Status: Open.

Enhancement

#4308 In nf-core/tools;

· Aratz opened on May 28, 2026

User-selected branch used for upstream repo when updating modules from a forked subworkflow remote

bugSomething isn't workingSomething isn't working

Status: Open.

#4296 In nf-core/tools;

· ScottNortonPhD opened on May 23, 2026

Add option to disable creating container configs

enhancement

Status: Open.

#4295 In nf-core/tools;

· ScottNortonPhD opened on May 23, 2026

stack trace using nf-core modules test

bugSomething isn't workingSomething isn't working

Status: Open.

#4273 In nf-core/tools;

· mahesh-panchal opened on May 8, 2026

Handle deprecated and deleted modules/subworkflows gracefully

enhancement

Status: Open.

#4260 In nf-core/tools;

· SPPearce opened on May 5, 2026

·  

4.1.0

meta.json stub file trips up meta_nf_meta_key linting

bugSomething isn't workingSomething isn't working

Status: Open.

#4250 In nf-core/tools;

· DLBPointon opened on Apr 29, 2026

·  

4.1.0