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Add rclone copy#12337

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antoniasaracco wants to merge 14 commits into
nf-core:masterfrom
antoniasaracco:create_Rclone
Open

Add rclone copy#12337
antoniasaracco wants to merge 14 commits into
nf-core:masterfrom
antoniasaracco:create_Rclone

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@antoniasaracco

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I added a new module for the RCLONE suite: rclone copy.

This module uses rclone copy to transfer files from the source path to the destination path, while allowing extra arguments to be passed through task.ext.args. This makes it possible to configure options such as logging, stats, certificate handling, chunk size, HTTP URL support and dry-run behavior from the pipeline config.

Notes:

For the nf-test, I am using the same input and output location together with --dry-run. The module would not have write permissions to perform the actual copy in the test environment, so running it this way allows us to mock how the command would be executed without requiring remote write access.

This is related to nf-core/datasync#45

@antoniasaracco antoniasaracco marked this pull request as draft July 9, 2026 15:03
@antoniasaracco antoniasaracco marked this pull request as ready for review July 9, 2026 16:05
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