Issues

• extract cram to bam to fastq from extract_reads

  mctp/hapster#16 · Filter by author mcieslik-mctp opened on May 27, 2020

• Mask genes in primary contigs?

  question
  mctp/hapster#15 · Filter by author MBMumphrey opened on May 27, 2020

• Don't include official alt contigs in reference?

  question
  mctp/hapster#14 · Filter by author MBMumphrey opened on May 27, 2020

• GFFs don't account for germline imputed indels

  bug
  mctp/hapster#13 · Filter by author MBMumphrey opened on May 25, 2020

• Add tune_parameters to help file

  documentation
  mctp/hapster#12 · Filter by author MBMumphrey opened on May 22, 2020

• Add option to choose number of cores for a command

  enhancement
  mctp/hapster#9 · Filter by author MBMumphrey opened on Dec 16, 2019

• Version control for tools package

  enhancement
  mctp/hapster#6 · Filter by author MBMumphrey opened on Dec 16, 2019

• Unhelpful snakemake errors when running extract_reads with no commands

  mctp/hapster#2 · Filter by author MBMumphrey opened on Dec 12, 2019