Issues · malariagen/malariagen-data-python · GitHub

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No Public API to Clear or Inspect In-Memory Caches — Users Cannot Reclaim Memory in Long-Running Sessions

#1289

· khushthecoder opened

on Apr 13, 2026

`diversity_stats` doesn't have a `max_cohort_size` parameter

#1288

· jonbrenas opened

on Apr 13, 2026

fix: geneset() and snp_dataset() are deprecated but emit no DeprecationWarning

#1285

· Tanisha127 opened

on Apr 12, 2026

snp_calls_to_vcf() silently drops requested FORMAT fields when underlying data arrays don't exist

#1283

· Yashsingh045 opened

on Apr 10, 2026

snp_calls_to_vcf() — Python-level per-sample loop creates severe performance bottleneck for large cohorts

#1280

· khushthecoder opened

on Apr 10, 2026

S3 references in the docstring for Pf8

#1279

· jonbrenas opened

on Apr 8, 2026

geneset() and snp_dataset() are deprecated but don't warn users

#1273

· ZiadXI opened

on Apr 3, 2026

`plot_samples_interactive_map` returns an error when the data contains colony data and no other `unassigned` samples

#1268

· jonbrenas opened

on Apr 1, 2026

Improve API and methods discoverability for agents and natural‑language interfaces

#1262

· caiocrocha opened

on Mar 31, 2026

Improve LRU cache test coverage by validating eviction order in load_genome_seq (test_veff.py)

#1244

· simplyshree opened

on Mar 29, 2026

Created tests/conftest.py with mocks for all missing dependencies to allow pytest to run tests.

#1242

· karthik642006 opened

on Mar 28, 2026

Add End-to-End Usage Examples and Real-World Analysis Workflow in README

#1238

· lovelymahor opened

on Mar 27, 2026