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style: Apply pre-commit auto-fixes (trailing whitespace, ruff-format)
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Lines changed: 4 additions & 1 deletion

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malariagen_data/plasmodium.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -244,7 +244,7 @@ def _subset_genome_sequence_region(
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slice_start = region.start - 1
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else:
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slice_start = None
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if region.end is not None:
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if region.end < 1:
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raise ValueError("Region end must be >= 1 or None.")

tests/test_plasmodium.py

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -692,6 +692,7 @@ def test_subset_genome_sequence_contig2(self):
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def test_subset_genome_sequence_region_slice(self):
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from malariagen_data.util import Region
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# contig1 is np.arange(10)
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# Valid slice 1-3 -> indices 0,1,2 (length 3)
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region = Region("contig1", 1, 3)
@@ -704,6 +705,7 @@ def test_subset_genome_sequence_region_slice(self):
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def test_subset_genome_sequence_region_invalid_start_0(self):
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from malariagen_data.util import Region
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region = Region("contig1", 0, 3)
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with self.assertRaises(ValueError):
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self.test_plasmodium_class._subset_genome_sequence_region(
@@ -712,6 +714,7 @@ def test_subset_genome_sequence_region_invalid_start_0(self):
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def test_subset_genome_sequence_region_invalid_end_0(self):
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from malariagen_data.util import Region
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region = Region("contig1", 1, 0)
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with self.assertRaises(ValueError):
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self.test_plasmodium_class._subset_genome_sequence_region(

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