QC data now being built with metadata

tristanpwdennis · tristanpwdennis · commit 0a9c07ce5c46 · 2025-09-28T01:48:39.000-05:00
Had commented this out, back now!
diff --git a/malariagen_data/anoph/sample_metadata.py b/malariagen_data/anoph/sample_metadata.py
@@ -349,7 +349,7 @@ def sequence_qc_metadata(
         self, sample_sets: Optional[base_params.sample_sets] = None
     ) -> pd.DataFrame:
         return self._parse_metadata_paths(
-            path_template="{release_path}/metadata/curation/{sample_set}/sequence_qc_stats.csv",
+            path_template="{release_path}/metadata/general/{sample_set}/sequence_qc_stats.csv",
             parse_metadata_func=self._parse_sequence_qc_metadata,
             sample_sets=sample_sets,
         )

Original file line number	Diff line number	Diff line change
`@@ -349,7 +349,7 @@ def sequence_qc_metadata(`
`349`	`349`	`self, sample_sets: Optional[base_params.sample_sets] = None`
`350`	`350`	`) -> pd.DataFrame:`
`351`	`351`	`return self._parse_metadata_paths(`
`352`		`- path_template="{release_path}/metadata/curation/{sample_set}/sequence_qc_stats.csv",`
	`352`	`+ path_template="{release_path}/metadata/general/{sample_set}/sequence_qc_stats.csv",`
`353`	`353`	`parse_metadata_func=self._parse_sequence_qc_metadata,`
`354`	`354`	`sample_sets=sample_sets,`
`355`	`355`	`)`