Link fix

chapter1/complex_mode.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (DOLFINx complex)
 #     language: python

chapter1/fundamentals_code.ipynb

@@ -124,11 +124,11 @@
     " Once the mesh has been created, we can create the finite element function space $V$.\n",
     "The finite element function space does not need to be the same as the one used to describe the mesh.\n",
     "DOLFINx supports a wide range of arbitrary order finite element function spaces, see:\n",
-    "[Supported elements in DOLFINx](https://defelement.org/lists/implementations/basix.ufl.html)\n",
+    "[Supported elements in DOLFINx](https://defelement.org/lists/implementations/basix_ufl.html)\n",
     "for an extensive list.\n",
     "To create a function space, we need to specify what mesh the space is defined on,\n",
-    "what element famil the space is based on, and the degree of the element.\n",
-    "These can for instance be defned through a tuple `(\"family\", degree)`, as shown below"
+    "what element family the space is based on, and the degree of the element.\n",
+    "These can for instance be defined through a tuple `(\"family\", degree)`, as shown below"
    ]
   },
   {

chapter1/fundamentals_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.19.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python
@@ -114,11 +114,11 @@
 #  Once the mesh has been created, we can create the finite element function space $V$.
 # The finite element function space does not need to be the same as the one used to describe the mesh.
 # DOLFINx supports a wide range of arbitrary order finite element function spaces, see:
-# [Supported elements in DOLFINx](https://defelement.org/lists/implementations/basix.ufl.html)
+# [Supported elements in DOLFINx](https://defelement.org/lists/implementations/basix_ufl.html)
 # for an extensive list.
 # To create a function space, we need to specify what mesh the space is defined on,
-# what element famil the space is based on, and the degree of the element.
-# These can for instance be defned through a tuple `("family", degree)`, as shown below
+# what element family the space is based on, and the degree of the element.
+# These can for instance be defined through a tuple `("family", degree)`, as shown below
 
 # +
 from dolfinx import fem

chapter1/membrane_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter1/nitsche.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter2/amr.ipynb

@@ -191,6 +191,7 @@
    },
    "outputs": [],
    "source": [
+    "plotter = pyvista.Plotter()\n",
     "curved_grid = pyvista.UnstructuredGrid(*dolfinx.plot.vtk_mesh(curved_mesh))\n",
     "curved_grid.cell_data[\"ct\"] = ct.values\n",
     "plotter.add_mesh(\n",

chapter2/amr.py

@@ -7,7 +7,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 # ---
 
 # # Adaptive mesh refinement with NetGen and DOLFINx

chapter2/diffusion_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter2/heat_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter2/helmholtz_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (DOLFINx complex)
 #     language: python

chapter2/hyperelasticity.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter2/linearelasticity_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter2/nonlinpoisson_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter2/ns_code1.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter2/ns_code2.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter2/singular_poisson.py

@@ -7,7 +7,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 # ---
 
 # # Singular Poisson problem

chapter3/component_bc.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter3/em.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter3/multiple_dirichlet.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter3/neumann_dirichlet_code.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter3/robin_neumann_dirichlet.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter3/subdomains.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter4/compiler_parameters.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter4/convergence.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter4/mixed_poisson.ipynb

@@ -336,7 +336,7 @@
     "    interpolation_points = Q_el.basix_element.x\n",
     "    for i, points in enumerate(interpolation_points[fdim]):\n",
     "        geom = ref_geom[ref_top[fdim][i]]\n",
-    "        ref_points = facet_cel.pull_back(points, geom)\n",
+    "        ref_points = facet_cel.pull_back(points, geom, tol=1e-6, maxit=25)\n",
     "        # Assert that interpolation points are all equal on all facets\n",
     "        if reference_facet_points is None:\n",
     "            reference_facet_points = ref_points\n",
@@ -378,7 +378,7 @@
     "    # Use lower-level interpolation that takes in the function evaluated at the physical\n",
     "    # interpolation points of the mesh.\n",
     "    qh = dolfinx.fem.Function(Q)\n",
-    "    qh._cpp_object.interpolate(\n",
+    "    qh._cpp_object.interpolate_f(\n",
     "        values.reshape(-1, domain.geometry.dim).T.copy(), boundary_entities[::2].copy()\n",
     "    )\n",
     "    qh.x.scatter_forward()\n",

chapter4/mixed_poisson.py

@@ -7,7 +7,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 # ---
 
 # # Mixed Poisson with a Schur complement pre-conditioner
@@ -223,7 +223,7 @@ def interpolate_facet_expression(
     interpolation_points = Q_el.basix_element.x
     for i, points in enumerate(interpolation_points[fdim]):
         geom = ref_geom[ref_top[fdim][i]]
-        ref_points = facet_cel.pull_back(points, geom)
+        ref_points = facet_cel.pull_back(points, geom, tol=1e-6, maxit=25)
         # Assert that interpolation points are all equal on all facets
         if reference_facet_points is None:
             reference_facet_points = ref_points
@@ -265,7 +265,7 @@ def interpolate_facet_expression(
     # Use lower-level interpolation that takes in the function evaluated at the physical
     # interpolation points of the mesh.
     qh = dolfinx.fem.Function(Q)
-    qh._cpp_object.interpolate(
+    qh._cpp_object.interpolate_f(
         values.reshape(-1, domain.geometry.dim).T.copy(), boundary_entities[::2].copy()
     )
     qh.x.scatter_forward()

chapter4/newton-solver.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.19.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

chapter4/solvers.py

@@ -6,7 +6,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.18.1
+#       jupytext_version: 1.19.4
 #   kernelspec:
 #     display_name: Python 3 (ipykernel)
 #     language: python

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "DOLFINx_Tutorial"
-version = "0.10.0"
+version = "0.11.0"
 dependencies = [
     "jupyter-book<2.0",
     "meshio",
@@ -13,7 +13,7 @@ dependencies = [
     "pandas",
     "tqdm",
     "pyvista[all]>=0.45.0",
-    "fenics-dolfinx>=0.10.0,<0.11.0",
+    "fenics-dolfinx>=0.11.0,<0.12.0",
     "sphinx-codeautolink",
     "trame_jupyter_extension",
     "jupytext",