goodarzilab
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- OxyFormer Public
OxyFormer is a causal AI framework for estimating the effects of altitude-derived oxygen exposure on cancer outcomes, combining attention-based tabular transformer pretraining with orthogonal double machine learning, site-level heterogeneity analysis, and technical white-paper reporting.
- pyFIRE Public
- mach-1 Public
Mach-1: Learning transcriptome architecture from sequence with a long-context RNA foundation model
- Pan-oncRNA Public
- mach-1.5-savanna Public
Mach-1.5 model training framework built on Savanna, supporting multi-species, hybrid convolutional architectures with preprocessed RefSeq data.
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