Looking through the code, hg19_to_linear_positions and remove_sites_near_centromere_and_telomeres are based on hg19 coordinates. The former does have a parameter for the build in the function definition but it is not actually used.
Is it unsafe to run deTiN on hg38 data?
Looking through the code,
hg19_to_linear_positionsandremove_sites_near_centromere_and_telomeresare based on hg19 coordinates. The former does have a parameter for the build in the function definition but it is not actually used.Is it unsafe to run deTiN on hg38 data?