Bump version to 0.1.9

.github/pull_request_template.md

@@ -0,0 +1,16 @@
+### What problem this PR addreseses
+
+<!-- Provide a brief overview and link to the issue. Attach outputs, including screenshots (before/after), if helpful for the reviewer. -->
+
+### What should the reviewer(s) do
+
+<!-- Merge the code, provide feedback, initiate a discussion, etc. -->
+
+<!--
+Use the following checklist items when applicable (select only what applies):
+- [ ] This PR introduces a public-facing change (e.g., figures, CLI input/output, API).
+    - [ ] For functional and algorithmic changes, tests are written or updated.
+    - [ ] Documentation (e.g., tutorials, examples, README) has been updated.
+    - [ ] A tracking issue or plan to update documentation exists.
+- [ ] This PR affects internal functionality only (no user-facing change).
+-->

.github/workflows/check-pr-main-version.yml

@@ -84,10 +84,6 @@ jobs:
               echo "New version is greater — creating release branch"
               git checkout -b release/$PR_VERSION
               git push origin release/$PR_VERSION
-
-              echo "Tagging release v$PR_VERSION"
-              git tag -a v$PR_VERSION -m "Release v$PR_VERSION"
-              git push origin v$PR_VERSION
             fi
 
           elif [[ "$RESULT" -eq 0 ]]; then
@@ -108,10 +104,6 @@ jobs:
             git checkout -b release/$NEXT_VERSION
             git push origin release/$NEXT_VERSION
 
-            echo "Tagging release v$NEXT_VERSION"
-            git tag -a v$NEXT_VERSION -m "Release v$NEXT_VERSION"
-            git push origin v$NEXT_VERSION
-
             PR_BODY=$(printf "This PR was automatically created because the submitted version \`%s\` matched the current release on \`main\`.\n\nIt bumps the patch version to \`%s\` and starts a new release process." "$PR_VERSION" "$NEXT_VERSION")
             gh pr create \
               --repo "$REPO" \

.github/workflows/deploy.yml

@@ -5,6 +5,9 @@ on:
     branches:
       - main
 
+permissions:
+  contents: write
+
 jobs:
   uv-deploy:
     name: deploy
@@ -14,15 +17,41 @@ jobs:
 
     steps:
       - uses: actions/checkout@v6
+        with:
+          fetch-depth: 0
 
       - name: Install uv
         uses: astral-sh/setup-uv@v7
+        with:
+          enable-cache: true
 
       - name: Verify lock file is up to date
         run: uv lock --check
 
+      - name: Read version
+        id: version
+        run: |
+          VERSION=$(uv version --short)
+          echo "version=$VERSION" >> $GITHUB_OUTPUT
+
       - name: Build the project
         run: uv build
 
+      - name: Create Git tag
+        run: |
+          git config user.name "github-actions"
+          git config user.email "github-actions@github.com"
+          git tag v${{ steps.version.outputs.version }}
+          git push origin v${{ steps.version.outputs.version }}
+
+      - name: Create GitHub Release
+        uses: softprops/action-gh-release@v2
+        with:
+          tag_name: v${{ steps.version.outputs.version }}
+          name: v${{ steps.version.outputs.version }}
+          generate_release_notes: true
+          files: |
+            dist/*
+
       - name: Publish to PyPi
         run: uv publish

.github/workflows/uv-pytests.yml

@@ -2,9 +2,7 @@ name: PyTests
 
 on:
   pull_request:
-    branches:
-      - dev
-      - main
+  workflow_dispatch:
 
 jobs:
   uv-pytests:

.gitignore

@@ -167,6 +167,9 @@ cython_debug/
 #  option (not recommended) you can uncomment the following to ignore the entire idea folder.
 #.idea/
 
+# BasedPyRight Config
+pyrightconfig.json
+
 # Ruff stuff:
 .ruff_cache/
 
@@ -185,9 +188,24 @@ ipynb-playground/
 *.h5
 *.npy
 
-# cursor
+# cursor/CLI
 .cursor
+.claude
+CLAUDE.md
+AGENTS.md
+AGENT.md
 
 # widget (JS build artifacts)
 node_modules/
 widget/src/quantem/widget/static/
+
+# widget — local-only (per-developer notebooks, docs scratch, build/test scripts).
+# Track only src/, js/, tests/test_*.py for now.
+widget/.gitignore
+widget/docs/
+widget/notebooks/
+widget/scripts/
+!widget/scripts/build.mjs
+widget/tests/integration/
+widget/tests/snapshots/
+

pyproject.toml

@@ -29,7 +29,7 @@ members = ["widget"]
 
 [project]
 name = "quantem"
-version = "0.1.8"
+version = "0.1.9"
 description = "quantitative electron microscopy analysis toolkit."
 keywords = ["EM","TEM","STEM","4DSTEM"]
 readme = "README.md"

src/quantem/__init__.py

@@ -1,4 +1,5 @@
 from pkgutil import extend_path
+
 __path__ = extend_path(__path__, __name__)
 
 from importlib.metadata import version