fix(lammps): distinguish neutral charge and dipole columns#1020
fix(lammps): distinguish neutral charge and dipole columns#1020njzjz-bot wants to merge 2 commits into
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Improve automatic six-column detection for neutral decimal charges and restrict legacy spin extraction to atomic-style extension rows so dipole moments are not reported as spins. Add regressions for both cases; existing tests used non-neutral charges and therefore missed the ambiguity. Coding-Agent: Codex Codex-Version: codex-cli 0.144.4 Model: gpt-5.6-sol Reasoning-Effort: xhigh
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Merging this PR will not alter performance
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Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## master #1020 +/- ##
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+ Coverage 86.87% 86.95% +0.07%
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Files 89 90 +1
Lines 8266 9182 +916
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wanghan-iapcm
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Both #995 fixes look correct -- the ./e neutral-charge detection inspects the right column, the dipole guard correctly suppresses spurious spins, and the two new tests genuinely fail on pre-fix code. One follow-up on the spin whitelist, see inline.
Restrict legacy spin-column parsing to the atomic layout without referencing an atom style that this branch does not register. Coding-Agent: Codex Codex-Version: codex-cli 0.144.6 Model: gpt-5.6-sol Reasoning-Effort: xhigh
Fixes #995.
Improve neutral decimal charge-style detection and prevent dipole fields from being reported as spins.
Tests:
cd tests && python -m unittest test_lammps_atom_styles test_lammps_spinWhy existing tests missed it: Existing charge tests used non-integral charges, and no dipole-style fixture checked the optional spin key.
Coding agent: Codex
Codex version: codex-cli 0.144.4
Model: gpt-5.6-sol
Reasoning effort: xhigh