Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 3 additions & 3 deletions 2023-bids-dicom.html
Original file line number Diff line number Diff line change
Expand Up @@ -241,7 +241,7 @@ <h2>BIDS ...</h2>
style="position:absolute; left:10%; top:0%; width:80%; opacity: 90%"/>
<img class="fragment current-visible" data-fragment-index="2" src="pics/BIDS-minder.svg"
style="position:absolute; left:0%; top:0%; width:100%;"/> -->
<img src="https://bids-standard.github.io/bids-starter-kit/_images/BIDS-minder.svg"/>
<img src="pics/BIDS-minder.svg" style="height:1000px"/>
</section>
</section>

Expand Down Expand Up @@ -300,8 +300,8 @@ <h2>We have two widely used standards, <br> which can benefit from cooperation</
<section>
<h2>DICOMs in BIDS: the recommended source</h2>
<div class="r-stack">
<img class="fragment current-visible" src="https://github.com/ReproNim/reproin/raw/master/docs/source/images/dbic-flow.png"/>
<img class="fragment current-visible" src="https://github.com/ReproNim/reproin/raw/master/docs/source/images/dbic-conversions.png"/>
<img class="fragment current-visible" src="pics/dbic-flow.png"/>
<img class="fragment current-visible" src="pics/dbic-conversions.png"/>
</div>
</section>

Expand Down
9 changes: 5 additions & 4 deletions INDEX.md
Original file line number Diff line number Diff line change
Expand Up @@ -238,13 +238,13 @@ Cross-references in the per-topic lookup point at the shelved path
citation (canonical citation slide).
- "BIDS ..." features bullets, including "you've seen one BIDS dataset
you've seen them all".
- BIDS-minder upstream-images slide
(`bids-standard.github.io/.../BIDS-minder.svg`).
- BIDS-minder slide (`pics/BIDS-minder.svg`).
- DICOM ↔ BIDS chronology (1982 DICOM → 2014 BIDS).
- Clunie MICCAI 2017 5-image fragments (data is in `pics/2017-Clunie-*.png`).
- **"All standards are 'Bad', but some are used"** — recurring
rhetorical slide.
- DICOMs in BIDS workflow (sourcedata, .json sidecars, BEP019, PR#1450).
- DICOMs in BIDS workflow (ReproIn `pics/dbic-flow.png` +
`pics/dbic-conversions.png`; sourcedata, .json sidecars, BEP019, PR#1450).

### `2023-brain-dandi-imgdatasrc.html` — short DANDI talk
- Tiny deck (86 lines), title-only template; safe to ignore as source.
Expand Down Expand Up @@ -365,7 +365,8 @@ ReproNim-containers / con/duct / ReproMan)
- *Asset*: `pics/webshot-repronim-containers.png`,
`pics/repronim-containers-{workflow,show,yoda-lower}.png`,
`pics/webshot-con-duct.png`, `pics/screenshot-duct-*.png`,
`pics/duct-mriqc-cerebra.png`, `pics/borrowed/reproin-logo.jpg`.
`pics/duct-mriqc-cerebra.png`, `pics/borrowed/reproin-logo.jpg`,
`pics/dbic-flow.png`, `pics/dbic-conversions.png` (+ `-p1`/`-p2` crops).

### Extend / standards work / BIDS BEPs / BIDS 2.0
- `2026-nih-bids2.0.html` — **best BIDS 2.0 walkthrough**: deprecations
Expand Down
1 change: 0 additions & 1 deletion pics/0000-zoom-background-qrcode.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/0000-zoom-background-qrcode.png
1 change: 0 additions & 1 deletion pics/2016-openfmri-dataset-datalad-howto.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/2016-openfmri-dataset-datalad-howto.png
1 change: 0 additions & 1 deletion pics/2026-ca-origami-retreat-aicoding-qrcode.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/2026-ca-origami-retreat-aicoding-qrcode.png
1 change: 0 additions & 1 deletion pics/2026-repronim-YODA-BIDS-webinar-qrcode.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/2026-repronim-YODA-BIDS-webinar-qrcode.png
1 change: 0 additions & 1 deletion pics/2026-usrse-con-talk-qrcode.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/2026-usrse-con-talk-qrcode.png
1 change: 0 additions & 1 deletion pics/202x-mvc-stack-qrcode.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/202x-mvc-stack-qrcode.png
1 change: 0 additions & 1 deletion pics/BIDS-minder.svg

This file was deleted.

1 change: 1 addition & 0 deletions pics/BIDS-minder.svg
1 change: 0 additions & 1 deletion pics/borrowed/arjlover-webshot.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/borrowed/arjlover-webshot.png
1 change: 0 additions & 1 deletion pics/con-tinuous-term-dandi-cli.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/con-tinuous-term-dandi-cli.png
1 change: 0 additions & 1 deletion pics/con_logo_square_with_fuzzybackground.png

This file was deleted.

1 change: 1 addition & 0 deletions pics/con_logo_square_with_fuzzybackground.png
1 change: 0 additions & 1 deletion pics/datalad-animated.gif

This file was deleted.

1 change: 1 addition & 0 deletions pics/datalad-animated.gif
1 change: 0 additions & 1 deletion pics/datalad-handbook-basics.svg

This file was deleted.

1 change: 1 addition & 0 deletions pics/datalad-handbook-basics.svg
1 change: 1 addition & 0 deletions pics/dbic-conversions.png
1 change: 1 addition & 0 deletions pics/dbic-flow.png
Loading