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2026-dhmc-ieeg: NWB/NeuroConv + Neurosift event-related slides - #27

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CodyCBakerPhD merged 4 commits into
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claude/festive-darwin-hvuqwk
Oct 8, 2026
Merged

CodyCBakerPhD merged 4 commits into
enh-2026-dhmc-ieegfrom
claude/festive-darwin-hvuqwk

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@CodyCBakerPhD

@CodyCBakerPhD CodyCBakerPhD commented Oct 7, 2026 •

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Fills in the NWB section of 2026-dhmc-ieeg.html (#26) and adds a DANDI Compute slide. This PR targets the enh-2026-dhmc-ieeg branch, so merging it adds these slides to PR 26.

Slides

NWB section (vertical stack):

  1. NWB: one file format for all modalities + metadata: the conversion gallery figure
  2. Converting data to NWB: GUIDE → NeuroConv → PyNWB/MatNWB, on an automated-to-flexible scale
  3. NeuroConv: the list of supported formats, with a link to the docs
  4. Neurosift: stream, don't download: the existing slide, with the GIF TODO replaced by a description of the event-related signals view
  5. Example 1: motion energy grouped by gabor_stimulus_contrast, aligned to auditory_cue_time (DANDI:000409)
  6. Example 2: LFP aligned to reward_start_time, channels 0, 2, 4 (DANDI:001539)
  7. Example 3: 40 Hz pulse-train presentations, probe D LFP, channels 5, 22, 25, 32 (DANDI:001637)

Compute section: the section is now a vertical stack. Under "Compute: pointers only" come four DANDI Compute slides that all use pics/dandi-compute-figure.svg. The first shows the whole poster fitted to the slide. The other three zoom in with CSS crops of the same SVG: orchestration, the spike-sorting pipeline, and the derivative Dandiset layout. The pointers slide's dandi-compute TODO bullet now points to these slides.

Each example slide's title links to the live Neurosift view, and its caption links to the dandiset. Every new slide has speaker notes.

For @yarikoptic: annex + upload (copy/paste)

I do not have permissions to falkor / datasets.datalad.org, so you need to do it for me

Suggested copy/paste. It squashes the whole PR, including any merges of the base, into one commit on top of enh-2026-dhmc-ieeg, with the 7 images annexed. It then uploads them and force-pushes with lease, so the plain copies drop out of the history:

R=gh-con   # your remote name for github.com/con/talks
B=claude/festive-darwin-hvuqwk
git fetch $R $B enh-2026-dhmc-ieeg && OLD=$(git rev-parse $R/$B)
git checkout -B $B $OLD
git reset -q --soft $R/enh-2026-dhmc-ieeg   # squash the whole PR into one commit on its base
F="pics/2026-dhmc-ieeg-nwb-one-for-all.svg pics/2026-dhmc-ieeg-nwb-convert-scale.svg pics/2026-dhmc-ieeg-neuroconv-formats.svg pics/neurosift-event-related-motion-energy-20261007.png pics/neurosift-event-related-lfp-reward-20261007.png pics/neurosift-event-related-lfp-40hz-20261007.png pics/dandi-compute-figure.svg"
git rm -q --cached $F && git annex add --force-large $F
git commit -q -m "2026-dhmc-ieeg: NWB/NeuroConv, Neurosift and DANDI Compute slides"
git annex copy --to datasets.datalad.org $F
git annex sync --only-annex --no-content datasets.datalad.org $R
git push --force-with-lease=$B:$OLD $R $B

🤖 Generated with Claude Code

https://claude.ai/code/session_01TXdd7X7FRyDaxWk9ngYT6j

@CodyCBakerPhD CodyCBakerPhD self-assigned this Oct 7, 2026
@CodyCBakerPhD
CodyCBakerPhD force-pushed the claude/festive-darwin-hvuqwk branch 4 times, most recently from c8b0f66 to 298272d Compare October 7, 2026 19:41
Comment thread 2026-dhmc-ieeg.html Outdated
Replace the skeleton NWB section with:
- NWB: one file format for all modalities + metadata (conversion gallery)
- Converting data to NWB: GUIDE / NeuroConv / PyNWB+MatNWB scale
- NeuroConv format listing
- Neurosift intro, now mentioning the event-related signals view
- Three Neurosift examples (screenshots, titles link to the live views):
  motion energy grouped by gabor_stimulus_contrast (DANDI:000409),
  LFP aligned to reward_start_time (DANDI:001539),
  40 Hz pulse-train presentations, probe D LFP (DANDI:001637)

Slide images rendered from Cody's PDFs at 200 dpi; screenshots kept as
the original WebP.  All images added via git-annex (MD5E).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01TXdd7X7FRyDaxWk9ngYT6j
@CodyCBakerPhD
CodyCBakerPhD force-pushed the claude/festive-darwin-hvuqwk branch from 298272d to 1c4072e Compare October 7, 2026 19:42
@github-actions

github-actions Bot commented Oct 7, 2026

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🚀 Preview of 09fa08d:

It will be live once the GitHub Pages deployment finishes.
Images whose git-annex content is not on datasets.datalad.org yet are listed in the build summary.
Re-run the Preview workflow to update it.

@CodyCBakerPhD

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@yarikoptic working great despite your skepticism: https://con.github.io/talks/pr-preview/pr-27/2026-dhmc-ieeg.html#/4/6

I will continue work on these slides later; should I do it on this branch or directly onto the target?

@yarikoptic

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I pushed overall re-structuring around those incrementals of the ecosystem slide(s)... even found how to make those hyperlinks in .svg's clickable!
sorry, it definetely caused conflicts, but hopefully from now on they would be avoidable since we should not overlap much.
Feel free to push directly into that branch. I will be filling it up for other sections tomorrow so will be pushing too, so pull/push frequently ;)

Conflicts in 2026-dhmc-ieeg.html resolved by keeping Yarik's new
detour structure and slotting Cody's content into it:
- NWB detour: nwb.svg reveal, then the NWB one-file-format slide
  (replacing the skeleton), conversion scale and NeuroConv formats
- Neurosift detour: nwb-apps.svg reveal, then the Neurosift intro and
  the three event-related examples (GIF TODO dropped; screenshots
  cover it)
- dandi-compute reveal now followed by the four DANDI Compute slides
  (replacing the TODO slide); duplicate Compute/DANDI Compute slides
  removed from the Leftover section

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01TXdd7X7FRyDaxWk9ngYT6j
@CodyCBakerPhD
CodyCBakerPhD marked this pull request as ready for review October 8, 2026 03:41
@CodyCBakerPhD
CodyCBakerPhD merged commit 876d5ad into enh-2026-dhmc-ieeg Oct 8, 2026
@CodyCBakerPhD
CodyCBakerPhD deleted the claude/festive-darwin-hvuqwk branch October 8, 2026 03:41
CodyCBakerPhD added a commit that referenced this pull request Oct 8, 2026
Replace the skeleton NWB section with:
- NWB: one file format for all modalities + metadata (conversion gallery)
- Converting data to NWB: GUIDE / NeuroConv / PyNWB+MatNWB scale
- NeuroConv format listing
- Neurosift intro, now mentioning the event-related signals view
- Three Neurosift examples (screenshots, titles link to the live views):
  motion energy grouped by gabor_stimulus_contrast (DANDI:000409),
  LFP aligned to reward_start_time (DANDI:001539),
  40 Hz pulse-train presentations, probe D LFP (DANDI:001637)

Slide images rendered from Cody's PDFs at 200 dpi; screenshots kept as
the original WebP.  All images added via git-annex (MD5E).

Claude-Session: https://claude.ai/code/session_01TXdd7X7FRyDaxWk9ngYT6j

Co-authored-by: Claude <noreply@anthropic.com>
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3 participants