biotaphy_scripts

compile cnode for speed

bash compile_cython.sh

python pd.py examples/tree.1000.tre taxon_1,taxon_3,taxon_100

Compute the stats is a psuedo-Lifemapper framework

$ python create_stats_matrices.py examples/Geometridae.lmm examples/Geometridae.nex

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
examples		examples
.gitignore		.gitignore
README.md		README.md
aln_reader.py		aln_reader.py
anc.py		anc.py
anc_dp.py		anc_dp.py
cnode.pyx		cnode.pyx
compile_cython.sh		compile_cython.sh
create_stats_matrices.py		create_stats_matrices.py
cython_setup.py		cython_setup.py
lm_munge.py		lm_munge.py
matrix.py		matrix.py
mnnd.py		mnnd.py
mnnd_dp.py		mnnd_dp.py
mpd.py		mpd.py
mpd_dp.py		mpd_dp.py
node.py		node.py
pd.py		pd.py
sequence.py		sequence.py
spd.py		spd.py
spd_dp.py		spd_dp.py
tree_reader.py		tree_reader.py
tree_utils.py		tree_utils.py