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Galaxy - #15

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LukaLmelias wants to merge 33 commits into

bge-barcoding:mainfrom

naturalis:galaxy

Open

Galaxy#15
LukaLmelias wants to merge 33 commits into
bge-barcoding:mainfrom
naturalis:galaxy

Commits on Aug 18, 2026
- first iteration of beegees on Galaxy
  luka lenaroto
  committed
  ee47cb6
- beegees data tables examples
  luka lenaroto
  committed
  c8c03c8
- example configuration on Galaxy config.yml
  luka lenaroto
  committed
  0e76042
- deployment CI
  luka lenaroto
  committed
  1233213
Commits on Aug 19, 2026
- rather build configs in python instead of Galaxy configfile xml keys
  LukaLmelias
  committed
  c83314a
- internally build R1/R2 absolute paths since users dont know galaxy absolute paths
  LukaLmelias
  committed
  a210d0d
- use default resource allocation; no user input
  LukaLmelias
  committed
  c6b37b9
- fix cmd arg name
  LukaLmelias
  committed
  b66c211
Commits on Sep 29, 2026
Commits on Sep 30, 2026
- galaxy: add zip as a tool requirement
  LukaLmelias
  committed
  02bcf83
- galaxy: output plots as a collection and name outputs by analysis
  LukaLmelias
  committed
  4ca9848
- adding tests
  LukaLmelias
  committed
  699da76
- channel not allowed
  LukaLmelias
  committed
  0ae569c
- linting fixes
  LukaLmelias
  committed
  e2d1634
- pass test data directory
  LukaLmelias
  committed
  ee5d7c1
- pass test data directory
  LukaLmelias
  committed
  7006230
- galaxy test data
  LukaLmelias
  committed
  1b98533
- galaxy: restore downsampling params and fix conditional checks
  
  LukaLmelias
  and
  claude
  committed
  1f90030
- galaxy: pass the taxid column through to gene-fetch
  
  LukaLmelias
  and
  claude
  committed
  ce44ea5
- galaxy: declare CSV inputs and taxonomic validation output as csv
  
  LukaLmelias
  and
  claude
  committed
  a88e46c
Commits on Oct 7, 2026
- Added several requirements for working container image.
  edwin
  committed
  b2efd8b
Commits on Oct 22, 2026
Commits on Oct 23, 2026
- Add Deployment process documentation
  LukaLmelias
  committed
  73fd91e
- included test data on toolshed release
  LukaLmelias
  committed
  4f480f1
- first toolshed release docs
  LukaLmelias
  committed
  7bd4113