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v3.0.7 test branch (new_human_filter) merge - #14

Merged

SchistoDan merged 12 commits into

mainfrom

new_human_filter

Oct 6, 2026

Merged

v3.0.7 test branch (new_human_filter) merge#14
SchistoDan merged 12 commits into
mainfrom
new_human_filter

Commits on Sep 18, 2026
- Replace human COX1 similarity filter with read mapping
  claude
  committed
  296818d
Commits on Sep 25, 2026
- Build barcodes from all non-overlapping nhmmer envelopes
  claude
  committed
  8c44f22
Commits on Sep 30, 2026
- Merge an extra nhmmer envelope only when it gains more than it costs
  claude
  committed
  a5bcba6
Commits on Oct 5, 2026
- Hide absolute paths in MultiQC header and structural_validation.csv, refactor Snakefile, and streamline comments in configs
  Daniel Parsons
  committed
  4f1bd61
- Update CHANGELOG for version 3.0.7
  SchistoDan
  authored
  87f274f
- Add human_reference.fasta file
  SchistoDan
  authored
  f2a9910
- Update Snakefile
  SchistoDan
  authored
  eacdfee
- Update 01_human_mitogenome_filter.py
  SchistoDan
  authored
  9c7ac21
- Point packaged-reference test at human_reference.fasta; describe NUMT-inclusive default in README
  claude
  committed
  ab00bc3
- Add human contamination reference documentation
  SchistoDan
  authored
  0430c8f
Commits on Oct 6, 2026
- Bump version from 3.0.6 to 3.0.7
  SchistoDan
  authored
  eb4f658
- Add PyPI publish workflow, declare pyyaml dependency, date v3.0.7 changelog
  claude
  committed
  030c8ef