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Establish MAST functions for unified DGE methodology project#20

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dtm2451 wants to merge 7 commits into
sc-dge-functionsfrom
sc-dge-mast
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Establish MAST functions for unified DGE methodology project#20
dtm2451 wants to merge 7 commits into
sc-dge-functionsfrom
sc-dge-mast

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@dtm2451

@dtm2451 dtm2451 commented Mar 16, 2026

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Establishes functions for running MAST

Details to know about this method:

  • Runs per cell, taking into account and modeling capture rate so...
  • *does not work for pseudobulk cases.
  • Additional input mast.freq.expressed.min defaulted to 0.2, minimum capture rate across target groups (within each cell type).

ToDos:

  • Further unify parameter names
  • test
  • implement our standard check functions

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