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Pull requests: UCSF-DSCOLAB/data_processing_pipelines

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Pull requests list

Snakemake migration
#95 opened Sep 26, 2025 by AlaaALatif Member Loading…
Updated to use $TMPDIR for individual jobs
#94 opened Jun 27, 2025 by erflynn Collaborator Loading…
Test Examples
#86 opened Jul 25, 2024 by amadeovezz Collaborator Loading…
@erflynn @syellamilli
4
Stripping date-time to match md5s
#84 opened Jul 18, 2024 by erflynn Collaborator Loading…
Separate output for post-demuxlet
#82 opened Jul 9, 2024 by erflynn Collaborator Loading…
1 task
cap nCount_ADT axis to 25000 in diagnostic plots
#71 opened Mar 25, 2024 by dtm2451 Collaborator Loading…
2
Bulk rnaseq multiqc per sample
#67 opened Mar 7, 2024 by AlaaALatif Member Loading…
1
Misc Run Setup: Add freecycle, adjust default errorStrategy, and fix resume/cleanup
#60 opened Dec 1, 2023 by erflynn Collaborator Loading…
15
working commit of the fmx-assign-to-gt functionality
#44 opened Nov 1, 2023 by erflynn Collaborator Loading…
9
Move parameters to configuration file, add run script
#4 opened Nov 17, 2021 by erflynn Collaborator Loading…
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