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Merge pull request #31 from tcmitchell/22-annotation
Fix identity and displayId for some objects in the SBOL3 annotation example
2 parents 3c62215 + 22d1eb7 commit d5a38ad

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Lines changed: 97 additions & 102 deletions

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‎SBOL3/entity/annotation/annotation.nt‎

Lines changed: 36 additions & 35 deletions
Original file line numberDiff line numberDiff line change
@@ -1,42 +1,43 @@
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#displayId> "usage1" .
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<http://parts.igem.org/repository> <http://parts.igem.org/website> "http://parts.igem.org/Main_Page" .
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<http://parts.igem.org/repository> <http://sbols.org/v3#description> "Registry of Standard Biological Parts" .
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<http://parts.igem.org/repository> <http://sbols.org/v3#displayId> "repository" .
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<http://parts.igem.org/repository> <http://sbols.org/v3#name> "iGEM Registry" .
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<http://parts.igem.org/repository> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/Repository> .
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<http://parts.igem.org/repository> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#TopLevel> .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/regulation> "//regulation/constitutive" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/regulation> "//regulation/second_regulation" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/sigmaFactor> "//rnap/prokaryote/ecoli/sigma70" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#description> "The experience page captures users' experience using the BBa_J23119 part" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#displayId> "information1" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#name> "BBa_J23119_experience" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/Information> .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_J72073> .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_M1638> .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_M36800> .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://sbols.org/v3#displayId> "twinParts" .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://sbols.org/v3#name> "twin parts" .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/TwinPartUsage> .
22+
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/inStock> "true" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/registryStar> "1" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#name> "BBa_J23119_usage" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/uses> "442" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/twinURLs> <https://sbolstandard.org/examples/BBa_J23119/twinParts> .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/twins> "7" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/uses> "442" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#description> "BBa_J23119 usage statistics" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#displayId> "usage1" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#name> "BBa_J23119_usage" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/IGEMUsage> .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/twins> "7" .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/inStock> "true" .
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<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/belongsTo> <http://parts.igem.org> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000167> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#displayId> "BBa_J23119 part" .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#name> "BBa_J23119" .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#description> "Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library." .
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<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/belongsTo> <http://parts.igem.org/repository> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/experienceURL> <http://parts.igem.org/Part:BBa_J23119:Experience> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/group> "iGEM2006_Berkeley" .
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<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/hasInformation> <https://sbolstandard.org/examples/BBa_J23119/information1> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/hasUsage> <https://sbolstandard.org/examples/BBa_J23119/usage1> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#description> "Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library." .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#displayId> "BBa_J23119" .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#name> "BBa_J23119" .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000167> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/experienceURL> <http://parts.igem.org/Part:BBa_J23119:Experience> .
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<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/group> "iGEM2006_Berkeley" .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_M36800> .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_M1638> .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_J72073> .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://sbols.org/v3#name> "twin parts" .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://sbols.org/v3#displayId> "twinParts" .
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<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/TwinPartUsage> .
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<http://parts.igem.org> <http://parts.igem.org/website> "http://parts.igem.org/Main_Page" .
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<http://parts.igem.org> <http://sbols.org/v3#description> "Registry of Standard Biological Parts" .
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<http://parts.igem.org> <http://sbols.org/v3#name> "iGEM Registry" .
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<http://parts.igem.org> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#TopLevel> .
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<http://parts.igem.org> <http://sbols.org/v3#displayId> "parts.igem.org" .
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<http://parts.igem.org> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/Repository> .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/regulation> "//regulation/second_regulation" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/regulation> "//regulation/constitutive" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/sigmaFactor> "//rnap/prokaryote/ecoli/sigma70" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#description> "The experience page captures users' experience using the BBa_J23119 part" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#name> "BBa_J23119_experience" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#displayId> "information1" .
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<https://sbolstandard.org/examples/BBa_J23119/information1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/Information> .

‎SBOL3/entity/annotation/annotation.rdf‎

Lines changed: 57 additions & 63 deletions
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<?xml version="1.0" encoding="UTF-8"?>
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<rdf:RDF
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xmlns:SO="https://identifiers.org/SO:"
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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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xmlns:igem="http://parts.igem.org/"
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xmlns:EDAM="https://identifiers.org/edam:"
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xmlns:sbol="http://sbols.org/v3#"
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xmlns:CHEBI="https://identifiers.org/CHEBI:"
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xmlns:prov="http://www.w3.org/ns/prov#"
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xmlns:SBO="https://identifiers.org/SBO:"
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xmlns:GO="https://identifiers.org/GO:"
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xmlns="https://sbolstandard.org/examples/"
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xmlns:om="http://www.ontology-of-units-of-measure.org/resource/om-2/"
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xml:base="https://sbolstandard.org/examples/">
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<sbol:Component rdf:about="BBa_J23119">
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<igem:belongsTo>
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<sbol:TopLevel rdf:about="http://parts.igem.org">
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<igem:website>http://parts.igem.org/Main_Page</igem:website>
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<sbol:description>Registry of Standard Biological Parts</sbol:description>
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<sbol:name>iGEM Registry</sbol:name>
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<sbol:displayId>parts.igem.org</sbol:displayId>
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<rdf:type rdf:resource="http://parts.igem.org/Repository"/>
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</sbol:TopLevel>
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</igem:belongsTo>
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<sbol:role rdf:resource="https://identifiers.org/SO:0000167"/>
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<sbol:displayId>BBa_J23119 part</sbol:displayId>
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<sbol:name>BBa_J23119</sbol:name>
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<sbol:description>Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library.</sbol:description>
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<igem:hasInformation>
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<sbol:Identified rdf:about="BBa_J23119/information1">
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<igem:regulation>//regulation/second_regulation</igem:regulation>
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<igem:regulation>//regulation/constitutive</igem:regulation>
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<igem:sigmaFactor>//rnap/prokaryote/ecoli/sigma70</igem:sigmaFactor>
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<sbol:description>The experience page captures users' experience using the BBa_J23119 part</sbol:description>
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<sbol:name>BBa_J23119_experience</sbol:name>
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<sbol:displayId>information1</sbol:displayId>
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<rdf:type rdf:resource="http://parts.igem.org/Information"/>
37-
</sbol:Identified>
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</igem:hasInformation>
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<sbol:type rdf:resource="https://identifiers.org/SBO:0000251"/>
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<igem:hasUsage>
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<sbol:Identified rdf:about="BBa_J23119/usage1">
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<sbol:displayId>usage1</sbol:displayId>
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<igem:registryStar>1</igem:registryStar>
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<sbol:name>BBa_J23119_usage</sbol:name>
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<igem:uses>442</igem:uses>
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<igem:twinURLs>
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<sbol:Identified rdf:about="BBa_J23119/twinParts">
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<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_M36800"/>
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<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_M1638"/>
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<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_J72073"/>
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<sbol:name>twin parts</sbol:name>
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<sbol:displayId>twinParts</sbol:displayId>
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<rdf:type rdf:resource="http://parts.igem.org/TwinPartUsage"/>
54-
</sbol:Identified>
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</igem:twinURLs>
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<sbol:description>BBa_J23119 usage statistics</sbol:description>
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<rdf:type rdf:resource="http://parts.igem.org/IGEMUsage"/>
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<igem:twins>7</igem:twins>
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<igem:inStock>true</igem:inStock>
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</sbol:Identified>
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</igem:hasUsage>
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<igem:experienceURL rdf:resource="http://parts.igem.org/Part:BBa_J23119:Experience"/>
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<igem:group>iGEM2006_Berkeley</igem:group>
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</sbol:Component>
3+
xmlns:igem="http://parts.igem.org/"
4+
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
5+
xmlns:sbol="http://sbols.org/v3#"
6+
>
7+
<rdf:Description rdf:about="https://sbolstandard.org/examples/BBa_J23119">
8+
<igem:experienceURL rdf:resource="http://parts.igem.org/Part:BBa_J23119:Experience"/>
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<igem:group>iGEM2006_Berkeley</igem:group>
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<sbol:name>BBa_J23119</sbol:name>
11+
<igem:hasUsage rdf:resource="https://sbolstandard.org/examples/BBa_J23119/usage1"/>
12+
<sbol:role rdf:resource="https://identifiers.org/SO:0000167"/>
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<igem:belongsTo rdf:resource="http://parts.igem.org/repository"/>
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<sbol:displayId>BBa_J23119</sbol:displayId>
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<igem:hasInformation rdf:resource="https://sbolstandard.org/examples/BBa_J23119/information1"/>
16+
<sbol:type rdf:resource="https://identifiers.org/SBO:0000251"/>
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<sbol:description>Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library.</sbol:description>
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<rdf:type rdf:resource="http://sbols.org/v3#Component"/>
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</rdf:Description>
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<rdf:Description rdf:about="http://parts.igem.org/repository">
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<rdf:type rdf:resource="http://parts.igem.org/Repository"/>
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<rdf:type rdf:resource="http://sbols.org/v3#TopLevel"/>
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<igem:website>http://parts.igem.org/Main_Page</igem:website>
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<sbol:name>iGEM Registry</sbol:name>
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<sbol:displayId>repository</sbol:displayId>
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<sbol:description>Registry of Standard Biological Parts</sbol:description>
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</rdf:Description>
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<rdf:Description rdf:about="https://sbolstandard.org/examples/BBa_J23119/twinParts">
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<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_M36800"/>
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<rdf:type rdf:resource="http://parts.igem.org/TwinPartUsage"/>
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<sbol:displayId>twinParts</sbol:displayId>
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<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_M1638"/>
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<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_J72073"/>
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<rdf:type rdf:resource="http://sbols.org/v3#Identified"/>
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<sbol:name>twin parts</sbol:name>
36+
</rdf:Description>
37+
<rdf:Description rdf:about="https://sbolstandard.org/examples/BBa_J23119/information1">
38+
<igem:sigmaFactor>//rnap/prokaryote/ecoli/sigma70</igem:sigmaFactor>
39+
<sbol:displayId>information1</sbol:displayId>
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<rdf:type rdf:resource="http://sbols.org/v3#Identified"/>
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<igem:regulation>//regulation/second_regulation</igem:regulation>
42+
<rdf:type rdf:resource="http://parts.igem.org/Information"/>
43+
<igem:regulation>//regulation/constitutive</igem:regulation>
44+
<sbol:description>The experience page captures users' experience using the BBa_J23119 part</sbol:description>
45+
<sbol:name>BBa_J23119_experience</sbol:name>
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</rdf:Description>
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<rdf:Description rdf:about="https://sbolstandard.org/examples/BBa_J23119/usage1">
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<igem:twins>7</igem:twins>
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<sbol:description>BBa_J23119 usage statistics</sbol:description>
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<igem:registryStar>1</igem:registryStar>
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<rdf:type rdf:resource="http://parts.igem.org/IGEMUsage"/>
52+
<igem:uses>442</igem:uses>
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<rdf:type rdf:resource="http://sbols.org/v3#Identified"/>
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<sbol:name>BBa_J23119_usage</sbol:name>
55+
<igem:twinURLs rdf:resource="https://sbolstandard.org/examples/BBa_J23119/twinParts"/>
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<igem:inStock>true</igem:inStock>
57+
<sbol:displayId>usage1</sbol:displayId>
58+
</rdf:Description>
6559
</rdf:RDF>

‎SBOL3/entity/annotation/annotation.ttl‎

Lines changed: 4 additions & 4 deletions
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@@ -21,13 +21,13 @@
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sbol:name "BBa_J23119_usage" .
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:BBa_J23119 a sbol:Component ;
24-
igem:belongsTo <http://parts.igem.org> ;
24+
igem:belongsTo <http://parts.igem.org/repository> ;
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igem:experienceURL igem:Part:BBa_J23119:Experience ;
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igem:group "iGEM2006_Berkeley" ;
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igem:hasInformation <BBa_J23119/information1> ;
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igem:hasUsage <BBa_J23119/usage1> ;
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sbol:description "Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library." ;
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sbol:displayId "BBa_J23119 part" ;
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sbol:displayId "BBa_J23119" ;
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sbol:name "BBa_J23119" ;
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sbol:role SO:0000167 ;
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sbol:type SBO:0000251 .
@@ -38,11 +38,11 @@
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sbol:displayId "twinParts" ;
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sbol:name "twin parts" .
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<http://parts.igem.org>
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<http://parts.igem.org/repository>
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a sbol:TopLevel , igem:Repository ;
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igem:website "http://parts.igem.org/Main_Page" ;
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sbol:description "Registry of Standard Biological Parts" ;
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sbol:displayId "parts.igem.org" ;
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sbol:displayId "repository" ;
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sbol:name "iGEM Registry" .
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<BBa_J23119/information1>

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