Skip to content

Commit 22d1eb7

Browse files
tcmitchelltcmitchell
committed
Fix identity and displayId for some objects
Fix the identity of the igem repository so that it conforms to the rules of SBOL 3 section 5.1. Make displayId of both the repository and BBa_J23119. The latter had a space in the displayId, which is not allowed, and which did not match the displayId portion of the identity.
1 parent 3c62215 commit 22d1eb7

3 files changed

Lines changed: 97 additions & 102 deletions

File tree

‎SBOL3/entity/annotation/annotation.nt‎

Lines changed: 36 additions & 35 deletions
Original file line numberDiff line numberDiff line change
@@ -1,42 +1,43 @@
1-
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#displayId> "usage1" .
1+
2+
<http://parts.igem.org/repository> <http://parts.igem.org/website> "http://parts.igem.org/Main_Page" .
3+
<http://parts.igem.org/repository> <http://sbols.org/v3#description> "Registry of Standard Biological Parts" .
4+
<http://parts.igem.org/repository> <http://sbols.org/v3#displayId> "repository" .
5+
<http://parts.igem.org/repository> <http://sbols.org/v3#name> "iGEM Registry" .
6+
<http://parts.igem.org/repository> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/Repository> .
7+
<http://parts.igem.org/repository> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#TopLevel> .
8+
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/regulation> "//regulation/constitutive" .
9+
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/regulation> "//regulation/second_regulation" .
10+
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/sigmaFactor> "//rnap/prokaryote/ecoli/sigma70" .
11+
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#description> "The experience page captures users' experience using the BBa_J23119 part" .
12+
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#displayId> "information1" .
13+
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#name> "BBa_J23119_experience" .
14+
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/Information> .
15+
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
16+
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_J72073> .
17+
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_M1638> .
18+
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_M36800> .
19+
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://sbols.org/v3#displayId> "twinParts" .
20+
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://sbols.org/v3#name> "twin parts" .
21+
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/TwinPartUsage> .
22+
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
23+
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/inStock> "true" .
224
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/registryStar> "1" .
3-
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#name> "BBa_J23119_usage" .
4-
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/uses> "442" .
525
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/twinURLs> <https://sbolstandard.org/examples/BBa_J23119/twinParts> .
26+
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/twins> "7" .
27+
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/uses> "442" .
628
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#description> "BBa_J23119 usage statistics" .
7-
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
29+
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#displayId> "usage1" .
30+
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://sbols.org/v3#name> "BBa_J23119_usage" .
831
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/IGEMUsage> .
9-
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/twins> "7" .
10-
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://parts.igem.org/inStock> "true" .
11-
<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/belongsTo> <http://parts.igem.org> .
12-
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000167> .
13-
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#displayId> "BBa_J23119 part" .
14-
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#name> "BBa_J23119" .
15-
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#description> "Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library." .
32+
<https://sbolstandard.org/examples/BBa_J23119/usage1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
33+
<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/belongsTo> <http://parts.igem.org/repository> .
34+
<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/experienceURL> <http://parts.igem.org/Part:BBa_J23119:Experience> .
35+
<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/group> "iGEM2006_Berkeley" .
1636
<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/hasInformation> <https://sbolstandard.org/examples/BBa_J23119/information1> .
17-
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
1837
<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/hasUsage> <https://sbolstandard.org/examples/BBa_J23119/usage1> .
38+
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#description> "Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library." .
39+
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#displayId> "BBa_J23119" .
40+
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#name> "BBa_J23119" .
41+
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000167> .
42+
<https://sbolstandard.org/examples/BBa_J23119> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000251> .
1943
<https://sbolstandard.org/examples/BBa_J23119> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
20-
<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/experienceURL> <http://parts.igem.org/Part:BBa_J23119:Experience> .
21-
<https://sbolstandard.org/examples/BBa_J23119> <http://parts.igem.org/group> "iGEM2006_Berkeley" .
22-
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_M36800> .
23-
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_M1638> .
24-
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://parts.igem.org/twinURL> <http://parts.igem.org/wiki/index.php?title=Part:BBa_J72073> .
25-
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://sbols.org/v3#name> "twin parts" .
26-
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
27-
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://sbols.org/v3#displayId> "twinParts" .
28-
<https://sbolstandard.org/examples/BBa_J23119/twinParts> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/TwinPartUsage> .
29-
<http://parts.igem.org> <http://parts.igem.org/website> "http://parts.igem.org/Main_Page" .
30-
<http://parts.igem.org> <http://sbols.org/v3#description> "Registry of Standard Biological Parts" .
31-
<http://parts.igem.org> <http://sbols.org/v3#name> "iGEM Registry" .
32-
<http://parts.igem.org> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#TopLevel> .
33-
<http://parts.igem.org> <http://sbols.org/v3#displayId> "parts.igem.org" .
34-
<http://parts.igem.org> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/Repository> .
35-
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/regulation> "//regulation/second_regulation" .
36-
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/regulation> "//regulation/constitutive" .
37-
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://parts.igem.org/sigmaFactor> "//rnap/prokaryote/ecoli/sigma70" .
38-
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#description> "The experience page captures users' experience using the BBa_J23119 part" .
39-
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#name> "BBa_J23119_experience" .
40-
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Identified> .
41-
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://sbols.org/v3#displayId> "information1" .
42-
<https://sbolstandard.org/examples/BBa_J23119/information1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://parts.igem.org/Information> .

‎SBOL3/entity/annotation/annotation.rdf‎

Lines changed: 57 additions & 63 deletions
Original file line numberDiff line numberDiff line change
@@ -1,65 +1,59 @@
1+
<?xml version="1.0" encoding="UTF-8"?>
12
<rdf:RDF
2-
xmlns:SO="https://identifiers.org/SO:"
3-
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
4-
xmlns:igem="http://parts.igem.org/"
5-
xmlns:EDAM="https://identifiers.org/edam:"
6-
xmlns:sbol="http://sbols.org/v3#"
7-
xmlns:CHEBI="https://identifiers.org/CHEBI:"
8-
xmlns:prov="http://www.w3.org/ns/prov#"
9-
xmlns:SBO="https://identifiers.org/SBO:"
10-
xmlns:GO="https://identifiers.org/GO:"
11-
xmlns="https://sbolstandard.org/examples/"
12-
xmlns:om="http://www.ontology-of-units-of-measure.org/resource/om-2/"
13-
xml:base="https://sbolstandard.org/examples/">
14-
<sbol:Component rdf:about="BBa_J23119">
15-
<igem:belongsTo>
16-
<sbol:TopLevel rdf:about="http://parts.igem.org">
17-
<igem:website>http://parts.igem.org/Main_Page</igem:website>
18-
<sbol:description>Registry of Standard Biological Parts</sbol:description>
19-
<sbol:name>iGEM Registry</sbol:name>
20-
<sbol:displayId>parts.igem.org</sbol:displayId>
21-
<rdf:type rdf:resource="http://parts.igem.org/Repository"/>
22-
</sbol:TopLevel>
23-
</igem:belongsTo>
24-
<sbol:role rdf:resource="https://identifiers.org/SO:0000167"/>
25-
<sbol:displayId>BBa_J23119 part</sbol:displayId>
26-
<sbol:name>BBa_J23119</sbol:name>
27-
<sbol:description>Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library.</sbol:description>
28-
<igem:hasInformation>
29-
<sbol:Identified rdf:about="BBa_J23119/information1">
30-
<igem:regulation>//regulation/second_regulation</igem:regulation>
31-
<igem:regulation>//regulation/constitutive</igem:regulation>
32-
<igem:sigmaFactor>//rnap/prokaryote/ecoli/sigma70</igem:sigmaFactor>
33-
<sbol:description>The experience page captures users' experience using the BBa_J23119 part</sbol:description>
34-
<sbol:name>BBa_J23119_experience</sbol:name>
35-
<sbol:displayId>information1</sbol:displayId>
36-
<rdf:type rdf:resource="http://parts.igem.org/Information"/>
37-
</sbol:Identified>
38-
</igem:hasInformation>
39-
<sbol:type rdf:resource="https://identifiers.org/SBO:0000251"/>
40-
<igem:hasUsage>
41-
<sbol:Identified rdf:about="BBa_J23119/usage1">
42-
<sbol:displayId>usage1</sbol:displayId>
43-
<igem:registryStar>1</igem:registryStar>
44-
<sbol:name>BBa_J23119_usage</sbol:name>
45-
<igem:uses>442</igem:uses>
46-
<igem:twinURLs>
47-
<sbol:Identified rdf:about="BBa_J23119/twinParts">
48-
<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_M36800"/>
49-
<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_M1638"/>
50-
<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_J72073"/>
51-
<sbol:name>twin parts</sbol:name>
52-
<sbol:displayId>twinParts</sbol:displayId>
53-
<rdf:type rdf:resource="http://parts.igem.org/TwinPartUsage"/>
54-
</sbol:Identified>
55-
</igem:twinURLs>
56-
<sbol:description>BBa_J23119 usage statistics</sbol:description>
57-
<rdf:type rdf:resource="http://parts.igem.org/IGEMUsage"/>
58-
<igem:twins>7</igem:twins>
59-
<igem:inStock>true</igem:inStock>
60-
</sbol:Identified>
61-
</igem:hasUsage>
62-
<igem:experienceURL rdf:resource="http://parts.igem.org/Part:BBa_J23119:Experience"/>
63-
<igem:group>iGEM2006_Berkeley</igem:group>
64-
</sbol:Component>
3+
xmlns:igem="http://parts.igem.org/"
4+
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
5+
xmlns:sbol="http://sbols.org/v3#"
6+
>
7+
<rdf:Description rdf:about="https://sbolstandard.org/examples/BBa_J23119">
8+
<igem:experienceURL rdf:resource="http://parts.igem.org/Part:BBa_J23119:Experience"/>
9+
<igem:group>iGEM2006_Berkeley</igem:group>
10+
<sbol:name>BBa_J23119</sbol:name>
11+
<igem:hasUsage rdf:resource="https://sbolstandard.org/examples/BBa_J23119/usage1"/>
12+
<sbol:role rdf:resource="https://identifiers.org/SO:0000167"/>
13+
<igem:belongsTo rdf:resource="http://parts.igem.org/repository"/>
14+
<sbol:displayId>BBa_J23119</sbol:displayId>
15+
<igem:hasInformation rdf:resource="https://sbolstandard.org/examples/BBa_J23119/information1"/>
16+
<sbol:type rdf:resource="https://identifiers.org/SBO:0000251"/>
17+
<sbol:description>Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library.</sbol:description>
18+
<rdf:type rdf:resource="http://sbols.org/v3#Component"/>
19+
</rdf:Description>
20+
<rdf:Description rdf:about="http://parts.igem.org/repository">
21+
<rdf:type rdf:resource="http://parts.igem.org/Repository"/>
22+
<rdf:type rdf:resource="http://sbols.org/v3#TopLevel"/>
23+
<igem:website>http://parts.igem.org/Main_Page</igem:website>
24+
<sbol:name>iGEM Registry</sbol:name>
25+
<sbol:displayId>repository</sbol:displayId>
26+
<sbol:description>Registry of Standard Biological Parts</sbol:description>
27+
</rdf:Description>
28+
<rdf:Description rdf:about="https://sbolstandard.org/examples/BBa_J23119/twinParts">
29+
<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_M36800"/>
30+
<rdf:type rdf:resource="http://parts.igem.org/TwinPartUsage"/>
31+
<sbol:displayId>twinParts</sbol:displayId>
32+
<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_M1638"/>
33+
<igem:twinURL rdf:resource="http://parts.igem.org/wiki/index.php?title=Part:BBa_J72073"/>
34+
<rdf:type rdf:resource="http://sbols.org/v3#Identified"/>
35+
<sbol:name>twin parts</sbol:name>
36+
</rdf:Description>
37+
<rdf:Description rdf:about="https://sbolstandard.org/examples/BBa_J23119/information1">
38+
<igem:sigmaFactor>//rnap/prokaryote/ecoli/sigma70</igem:sigmaFactor>
39+
<sbol:displayId>information1</sbol:displayId>
40+
<rdf:type rdf:resource="http://sbols.org/v3#Identified"/>
41+
<igem:regulation>//regulation/second_regulation</igem:regulation>
42+
<rdf:type rdf:resource="http://parts.igem.org/Information"/>
43+
<igem:regulation>//regulation/constitutive</igem:regulation>
44+
<sbol:description>The experience page captures users' experience using the BBa_J23119 part</sbol:description>
45+
<sbol:name>BBa_J23119_experience</sbol:name>
46+
</rdf:Description>
47+
<rdf:Description rdf:about="https://sbolstandard.org/examples/BBa_J23119/usage1">
48+
<igem:twins>7</igem:twins>
49+
<sbol:description>BBa_J23119 usage statistics</sbol:description>
50+
<igem:registryStar>1</igem:registryStar>
51+
<rdf:type rdf:resource="http://parts.igem.org/IGEMUsage"/>
52+
<igem:uses>442</igem:uses>
53+
<rdf:type rdf:resource="http://sbols.org/v3#Identified"/>
54+
<sbol:name>BBa_J23119_usage</sbol:name>
55+
<igem:twinURLs rdf:resource="https://sbolstandard.org/examples/BBa_J23119/twinParts"/>
56+
<igem:inStock>true</igem:inStock>
57+
<sbol:displayId>usage1</sbol:displayId>
58+
</rdf:Description>
6559
</rdf:RDF>

‎SBOL3/entity/annotation/annotation.ttl‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -21,13 +21,13 @@
2121
sbol:name "BBa_J23119_usage" .
2222

2323
:BBa_J23119 a sbol:Component ;
24-
igem:belongsTo <http://parts.igem.org> ;
24+
igem:belongsTo <http://parts.igem.org/repository> ;
2525
igem:experienceURL igem:Part:BBa_J23119:Experience ;
2626
igem:group "iGEM2006_Berkeley" ;
2727
igem:hasInformation <BBa_J23119/information1> ;
2828
igem:hasUsage <BBa_J23119/usage1> ;
2929
sbol:description "Parts J23100 through J23119 are a family of constitutive promoter parts isolated from a small combinatorial library." ;
30-
sbol:displayId "BBa_J23119 part" ;
30+
sbol:displayId "BBa_J23119" ;
3131
sbol:name "BBa_J23119" ;
3232
sbol:role SO:0000167 ;
3333
sbol:type SBO:0000251 .
@@ -38,11 +38,11 @@
3838
sbol:displayId "twinParts" ;
3939
sbol:name "twin parts" .
4040

41-
<http://parts.igem.org>
41+
<http://parts.igem.org/repository>
4242
a sbol:TopLevel , igem:Repository ;
4343
igem:website "http://parts.igem.org/Main_Page" ;
4444
sbol:description "Registry of Standard Biological Parts" ;
45-
sbol:displayId "parts.igem.org" ;
45+
sbol:displayId "repository" ;
4646
sbol:name "iGEM Registry" .
4747

4848
<BBa_J23119/information1>

0 commit comments

Comments
 (0)