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add gsea and binomial enrichment to the vignette

Status: Open.

#48 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Jul 3, 2025

fix vignettes and cli code

Status: Open.

#47 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Jul 3, 2025

Inconsistent data type values in annotations.json

Status: Open.

#26 In MoseleyBioinformaticsLab/categoryCompare2;

· ehinderer opened on Nov 13, 2018

Need more informative error on missing json_file when running categoryCompare.R executable

Status: Open.

#24 In MoseleyBioinformaticsLab/categoryCompare2;

· ehinderer opened on Mar 11, 2018

wrapper for most common use case

Status: Open.

#23 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Apr 23, 2017

consider R6 methods

Status: Open.

#22 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Aug 25, 2016

add default labels, and methods to change them

Status: Open.

#21 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Aug 25, 2016

move generate_annotation_similarity_graph switch outside the calc_similarity

Status: Open.

#20 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on May 14, 2016

add weight based on enrichment similarity

Status: Open.

#19 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Apr 26, 2016

hypergeom_feature constructor

Status: Open.

#17 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Apr 26, 2016

hypergeom_feature should create universe if null

Status: Open.

#16 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Apr 26, 2016

single function for generating annotation object from eg.db

Status: Open.

#15 In MoseleyBioinformaticsLab/categoryCompare2;

· rmflight opened on Apr 26, 2016