This repository includes code used for comparisons of core and noncore genes and for VeP (Variant Effect Predictor) analysis in the cowpea pan-genome project.
The cowpea pangenome manuscript is available on bioXriv.
- Assemblies, annotations, variant calls (SNPs and indels) for 7 genomes are available here
- The physical positions for iSelect SNPs relative to each genome assembly are avaiable in this repository
- Cowpea pangenome assemblies and annotation are also avaialble from the Joint Genome Institute here
- Larger files from the project will be available from a DRUM repository.