sc-hyp-org

This repository contains detailed code for the analysis of scRNAseq data

Analysis

• Quality and Preprocessing
• Clustering and Cell Classification
• Cell Proportions Analysis
• Deconvolution Analysis
• Pseudobulk Differential Expression
          - 0_Stroma Pseudobulk
          - 1_Stroma Pseudobulk
          - 2_Stroma Pseudobulk
          - 3_Stroma Pseudobulk
          - 4_Stroma Pseudobulk
          - 5_Distal_Tubule Pseudobulk.md
          - 6_Proliferating Pseudobulk.md
          - 7_Myocyte Pseudobulk
          - 8_Podocyte Pseudobulk
          - 9_Neural Pseudobulk
          - 10_Early_Nephron Pseudobulk
          - 11_Cellular_Stress Pseudobulk
          - 12_Proximal_Tubule Pseudobulk
          - 13_Endotelial Pseudobulk
• Proximal Tubule reclassified

Interactive APP

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