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Install bifti in playground notebooks and playground CI #203

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1 change: 1 addition & 0 deletions .github/workflows/playground_test.yml
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Expand Up @@ -56,6 +56,7 @@ jobs:
pip install pydisseqt
pip install ismrmrd
pip install MRzeroCore --no-deps
pip install bifti
pip install torchkbnufft PyWavelets tqdm scikit-image
wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null
pip install jupyter nbconvert
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1 change: 1 addition & 0 deletions documentation/playground_mr0/Pulseq_zero_TSE_FAopt_SARtask.ipynb
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Expand Up @@ -80,6 +80,7 @@
"!pip install pulseqzero==0.2.1\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps &> /dev/null\n",
"!pip install bifti --no-deps &> /dev/null\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null\n"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_DREAM_STE_seq.ipynb
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Expand Up @@ -29,6 +29,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_DREAM_STID_seq.ipynb
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Expand Up @@ -53,6 +53,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_DWI_SE_EPI.ipynb
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Expand Up @@ -62,6 +62,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/subject05.npz &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_EPI_2D_seq.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_FID_seq.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_FLASH_2D_seq.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_GRE_to_FLASH.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt"
]
},
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_RARE_2D_seq.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_SE_CPMG_seq.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_STE_3pulses_5echoes_seq.ipynb
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Expand Up @@ -44,6 +44,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_TSE_2D_multi_shot_seq.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_bSSFP_2D_seq.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null\n",
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_diffusion_prep_STEAM_2D_seq.ipynb
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Expand Up @@ -49,6 +49,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/subject05.npz &> /dev/null"
]
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_time_vs_acc_bspBSSFP.ipynb
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Expand Up @@ -65,6 +65,7 @@
"!pip install torchkbnufft --no-deps\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null\n",
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1 change: 1 addition & 0 deletions documentation/playground_mr0/mr0_upload_seq.ipynb
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Expand Up @@ -18,6 +18,7 @@
"\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps &> /dev/null\n",
"!pip install bifti --no-deps &> /dev/null\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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1 change: 1 addition & 0 deletions documentation/playground_mr0/pulseq_zero_DESC_demo.ipynb
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Expand Up @@ -25,6 +25,7 @@
"!pip install pulseqzero\n",
"!pip install ismrmrd\n",
"!pip install MRzeroCore --no-deps &> /dev/null\n",
"!pip install bifti --no-deps &> /dev/null\n",
"!pip install pydisseqt"
]
},
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1 change: 1 addition & 0 deletions documentation/playground_mr0/unsorted/mr0_EPI_2D_with_ORC_seq.ipynb
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Expand Up @@ -52,6 +52,7 @@
"!pip install pypulseq &> /dev/null\n",
"!pip install torchkbnufft --no-deps\n",
"!pip install MRzeroCore --no-deps\n",
"!pip install bifti --no-deps\n",
"!pip install pydisseqt\n",
"\n",
"!wget https://github.com/MRsources/MRzero-Core/raw/main/documentation/playground_mr0/numerical_brain_cropped.mat &> /dev/null"
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