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v0.10.3: per-chemistry flexiplex edit distances and config file reorg… - #51
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🟢 Approval recommended
The configuration reorganization is consistently applied across workflow consumers, with no unresolved correctness issues found.
Review effort: Balanced
Findings: None
What changed in this PR
Moves chemistry configuration files into assets/ and makes Flexiplex edit distances chemistry-configurable.
Changes:
- Added per-chemistry Flexiplex flank and barcode edit distances.
- Renamed and reorganized preprocessing configuration files.
- Removed superseded global Flexiplex parameters.
| File | Description |
|---|---|
modules/preprocess_fastq.nf |
Loads chemistry-specific preprocessing settings. |
main.nf |
Uses reorganized asset paths. |
conf/dev.config |
Removes obsolete Flexiplex parameters. |
CHANGELOG.md |
Documents configuration changes. |
assets/flexiplex_config.csv |
Adds per-chemistry edit distances. |
assets/cutadapt_config.csv |
Provides renamed adapter configuration. |
assets/barcode_coordinate_config.csv |
Relocates barcode and spatial paths. |
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