GavinHaLab
- 37 followers
- FRED HUTCHINSON CANCER RESEARCH CENTER
- https://gavinhalab.org
- @gavinha
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Repositories
- Triton Public Forked from denniepatton/Triton
As a cell-free DNA (cfDNA) processing pipeline, Triton conducts fragmentomic and phased-nucleosome coverage analyses on individual or composite genomic regions and outputs both region-level biomarkers and nt-resolution signal profiles.
- ichorCNA Public Forked from broadinstitute/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
- TitanCNA_SV_WGS Public
- BLCA-subtype-evolution-paper Public
- mutect2_snakemake Public Forked from annahoge/mutect2_snakemake
A snakemake to run Mutect2 on analysis-ready bams, following GATK best practices.
- Keraon Public Forked from denniepatton/Keraon
A tool for estimating heterogenous phenotype fractions from ctDNA features
- CRAMboozle Public
A snakemake workflow for CRAMboozle on Fred Hutch servers. CRAMboozle is a modified version of BAMboozle which de-identifies alignment data and takes either BAM or CRAM format for both input and output (CRAM to CRAM by default).
- PEARL Public
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