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khealkheal
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Regenerate docs
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‎docs/corems/encapsulation/factory/parameters.html‎

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‎docs/corems/encapsulation/factory/processingSetting.html‎

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‎docs/corems/mass_spectra/calc/SignalProcessing.html‎

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‎docs/corems/mass_spectra/input/rawFileReader.html‎

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‎docs/corems/mass_spectrum/calc.html‎

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@@ -38,7 +38,6 @@ <h2>Submodules</h2>
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<li><a href="calc/MeanResolvingPowerFilter.html">MeanResolvingPowerFilter</a></li>
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<li><a href="calc/NoiseCalc.html">NoiseCalc</a></li>
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<li><a href="calc/NoiseCalc_Bayes.html">NoiseCalc_Bayes</a></li>
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<li><a href="calc/NoiseCalc_Dynamic.html">NoiseCalc_Dynamic</a></li>
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<li><a href="calc/PeakPicking.html">PeakPicking</a></li>
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</ul>
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‎docs/corems/mass_spectrum/calc/Calibration.html‎

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@@ -520,8 +520,8 @@ <h1 class="modulename">
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</span><span id="L-427"><a href="#L-427"><span class="linenos">427</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_order</span> <span class="o">=</span> <span class="n">order</span>
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</span><span id="L-428"><a href="#L-428"><span class="linenos">428</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_RMS</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">res</span><span class="p">[</span><span class="s1">&#39;fun&#39;</span><span class="p">])</span>
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</span><span id="L-429"><a href="#L-429"><span class="linenos">429</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_points</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">cal_refs_mz</span><span class="p">))</span>
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</span><span id="L-430"><a href="#L-430"><span class="linenos">430</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calib_ref_mzs</span> <span class="o">=</span> <span class="n">cal_refs_mz</span>
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</span><span id="L-431"><a href="#L-431"><span class="linenos">431</span></a> <span class="c1">#self.mass_spectrum.calib_meas_mzs = cal_refs_mz</span>
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</span><span id="L-430"><a href="#L-430"><span class="linenos">430</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_ref_mzs</span> <span class="o">=</span> <span class="n">cal_refs_mz</span>
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</span><span id="L-431"><a href="#L-431"><span class="linenos">431</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_meas_mzs</span> <span class="o">=</span> <span class="n">cal_peaks_mz</span>
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</span><span id="L-432"><a href="#L-432"><span class="linenos">432</span></a>
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</span><span id="L-433"><a href="#L-433"><span class="linenos">433</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_segment</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">mzsegment</span>
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</span><span id="L-434"><a href="#L-434"><span class="linenos">434</span></a>
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</span><span id="MzDomainCalibration-428"><a href="#MzDomainCalibration-428"><span class="linenos">428</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_order</span> <span class="o">=</span> <span class="n">order</span>
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</span><span id="MzDomainCalibration-429"><a href="#MzDomainCalibration-429"><span class="linenos">429</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_RMS</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">res</span><span class="p">[</span><span class="s1">&#39;fun&#39;</span><span class="p">])</span>
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</span><span id="MzDomainCalibration-430"><a href="#MzDomainCalibration-430"><span class="linenos">430</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_points</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">cal_refs_mz</span><span class="p">))</span>
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</span><span id="MzDomainCalibration-431"><a href="#MzDomainCalibration-431"><span class="linenos">431</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calib_ref_mzs</span> <span class="o">=</span> <span class="n">cal_refs_mz</span>
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</span><span id="MzDomainCalibration-432"><a href="#MzDomainCalibration-432"><span class="linenos">432</span></a> <span class="c1">#self.mass_spectrum.calib_meas_mzs = cal_refs_mz</span>
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</span><span id="MzDomainCalibration-431"><a href="#MzDomainCalibration-431"><span class="linenos">431</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_ref_mzs</span> <span class="o">=</span> <span class="n">cal_refs_mz</span>
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</span><span id="MzDomainCalibration-432"><a href="#MzDomainCalibration-432"><span class="linenos">432</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_meas_mzs</span> <span class="o">=</span> <span class="n">cal_peaks_mz</span>
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</span><span id="MzDomainCalibration-433"><a href="#MzDomainCalibration-433"><span class="linenos">433</span></a>
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</span><span id="MzDomainCalibration-434"><a href="#MzDomainCalibration-434"><span class="linenos">434</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_segment</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">mzsegment</span>
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</span><span id="MzDomainCalibration-435"><a href="#MzDomainCalibration-435"><span class="linenos">435</span></a>
@@ -1649,8 +1649,8 @@ <h6 id="returns">Returns</h6>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-428"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-428"><span class="linenos">428</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_order</span> <span class="o">=</span> <span class="n">order</span>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-429"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-429"><span class="linenos">429</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_RMS</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">res</span><span class="p">[</span><span class="s1">&#39;fun&#39;</span><span class="p">])</span>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-430"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-430"><span class="linenos">430</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_points</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">cal_refs_mz</span><span class="p">))</span>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-431"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-431"><span class="linenos">431</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calib_ref_mzs</span> <span class="o">=</span> <span class="n">cal_refs_mz</span>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-432"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-432"><span class="linenos">432</span></a> <span class="c1">#self.mass_spectrum.calib_meas_mzs = cal_refs_mz</span>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-431"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-431"><span class="linenos">431</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_ref_mzs</span> <span class="o">=</span> <span class="n">cal_refs_mz</span>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-432"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-432"><span class="linenos">432</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_meas_mzs</span> <span class="o">=</span> <span class="n">cal_peaks_mz</span>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-433"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-433"><span class="linenos">433</span></a>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-434"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-434"><span class="linenos">434</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">mass_spectrum</span><span class="o">.</span><span class="n">calibration_segment</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">mzsegment</span>
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</span><span id="MzDomainCalibration.recalibrate_mass_spectrum-435"><a href="#MzDomainCalibration.recalibrate_mass_spectrum-435"><span class="linenos">435</span></a>

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