Issues

• NIA_CARD fast5: check each file's own sample against its folder's sequencing row

  DataBiosphere/meta-disco#740 · Filter by author NoopDog opened on Oct 23, 2026

• Re-runnable genotype check for the SGDP record (gtcheck, optionally a genome-wide panel)

  DataBiosphere/meta-disco#738 · Filter by author NoopDog opened on Oct 23, 2026

• SGDP genotype record: pin the measured gVCFs by md5 instead of the catalog

  DataBiosphere/meta-disco#737 · Filter by author NoopDog opened on Oct 23, 2026

• AnVIL_MAGE: no source states an instrument model for its 3,285 files

  DataBiosphere/meta-disco#735 · Filter by author NoopDog opened on Oct 22, 2026

• Record the classification code's tree hash in run provenance, so a squash merge does not orphan a run

  DataBiosphere/meta-disco#734 · Filter by author NoopDog opened on Oct 22, 2026

• Report generators list ties in the run's write order, so a refresh reorders them

  DataBiosphere/meta-disco#732 · Filter by author NoopDog opened on Oct 22, 2026

• Link ANVIL_T2T_CHRY's joint-called VCFs to the workspace tars they were genotyped from

  DataBiosphere/meta-disco#729 · Filter by author NoopDog opened on Oct 22, 2026

• Check the 1000 Genomes workspace tars' samples against their own callset.json

  DataBiosphere/meta-disco#725 · Filter by author NoopDog opened on Oct 21, 2026
  1

• Carry each file's storage path onto the output records (follow-up to #717)

  DataBiosphere/meta-disco#723 · Filter by author NoopDog opened on Oct 21, 2026

• Coverage report: read the source totals from the input the run records, not today's input

  DataBiosphere/meta-disco#714 · Filter by author NoopDog opened on Oct 19, 2026

• Settle a sample's donor from AnVIL's biosample-to-donor links: IGVF samples name no donor

  DataBiosphere/meta-disco#711 · Filter by author NoopDog opened on Oct 18, 2026
  1

  

• HPRC's upstream data tables as evidence for AnVIL's HPRC datasets: measure what they would add

  DataBiosphere/meta-disco#709 · Filter by author NoopDog opened on Oct 18, 2026

• Biosample type for cell lines: type Coriell and GIAB samples as Cell line

  DataBiosphere/meta-disco#706 · Filter by author NoopDog opened on Oct 18, 2026

• Biosample type for pooled samples: read IGVF's own sample types, as a list

  DataBiosphere/meta-disco#705 · Filter by author NoopDog opened on Oct 18, 2026

• Write a donor's family_id as an identifier with a namespace

  DataBiosphere/meta-disco#704 · Filter by author NoopDog opened on Oct 18, 2026

• Sample facts: anatomical site as ontology terms, age at collection, karyotype

  DataBiosphere/meta-disco#702 · Filter by author NoopDog opened on Oct 18, 2026

• Lineage steps whose parent is a sample: read AnVIL's used_biosample_id through the biosample ids

  DataBiosphere/meta-disco#701 · Filter by author NoopDog opened on Oct 18, 2026
  1

• Count AnVIL's file-to-biosample and file-to-donor links as evidence for a file's samples, and report conflicts and orphans

  DataBiosphere/meta-disco#698 · Filter by author NoopDog opened on Oct 18, 2026
  

• Roadmap: demonstrate participant-level search in the AnVIL Data Explorer

  DataBiosphere/meta-disco#696 · Filter by author NoopDog opened on Oct 17, 2026
  

• Entity evidence envelope: its own schema class instead of a runtime refusal of entity_identifier

  DataBiosphere/meta-disco#694 · Filter by author NoopDog opened on Oct 17, 2026

• Epic: donor and sample records, keyed by identifier, so files can be found by who they came from

  DataBiosphere/meta-disco#692 · Filter by author NoopDog opened on Oct 16, 2026
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• Every 'latest run' default can read another clone's run

  DataBiosphere/meta-disco#688 · Filter by author NoopDog opened on Oct 14, 2026

• make classify-and-report reports on the newest run, not the one classify made

  DataBiosphere/meta-disco#687 · Filter by author NoopDog opened on Oct 14, 2026
  2

• Link each bcftools stats report to the VCF it reports on, read from its own ID line

  DataBiosphere/meta-disco#683 · Filter by author NoopDog opened on Oct 13, 2026

• HPRC_R2: link each assembly's annotations and reference alignments to the assembly they were made from

  DataBiosphere/meta-disco#682 · Filter by author NoopDog opened on Oct 13, 2026