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Added support for reading patchliner e data (different chip layout) #43

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Added support for reading patchliner e data (different chip layout) #43

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20 changes: 13 additions & 7 deletions syncropatch_export/trace.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,5 @@
import json
import os
import string

import numpy as np

Expand Down Expand Up @@ -53,20 +52,27 @@ def __init__(self, filepath, json_file: str):
self.MeasurementLayout = TraceHeader['MeasurementLayout']
self.FileInformation = TraceHeader['FileInformation']

# Create (hardcoded) list-of-list of well names:
# Create list-of-list of well names:
# [['A01', 'B01', ..., 'P01'],
# ['A02', 'B02', ..., 'P02'],
# ...
# ['A24', 'B24', ..., 'P24']]
# So a list of 24 lists with 16 entries each
#
self.WP_nRows = TraceHeader['Chiplayout']['WP_nRows']
self.WP_nCols = TraceHeader['Chiplayout']['WP_nCols']
if self.WP_nCols > 26:
raise NotImplementedError( # pragma: no cover
'Unsupported chip layout (more than 26 columns)')
if self.WP_nRows > 100:
raise NotImplementedError( # pragma: no cover
'Unsupported chip layout (more than 100 rows)')
abc = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ'
self.WELL_ID = np.array([
[lab + str(i).zfill(2) for lab in string.ascii_uppercase[:16]]
for i in range(1, 25)])
[f'{abc[i]}{j:>02}' for j in range(self.WP_nRows)]
for i in range(self.WP_nCols)
])

self.NofSweeps = self.MeasurementLayout['NofSweeps']
self.WP_nRows = TraceHeader['Chiplayout']['WP_nRows']
self.WP_nCols = TraceHeader['Chiplayout']['WP_nCols']
self.nCols = self.MeasurementLayout['nCols']
self.NofSamples = self.MeasurementLayout['NofSamples']
self.Leakdata = self.MeasurementLayout['Leakdata']
Expand Down
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