Issues

• Fix readme version number

  BuildACell/subsbml#30 · Filter by author ayush9pandey opened on Oct 19, 2020

• Matplotlib dependency should only be optional - fix examples and tutorials accordingly.

  BuildACell/subsbml#29 · Filter by author ayush9pandey opened on Oct 19, 2020

• for specie Compartment is set by name and not compartment id when using renameCompartments and combineSubsystems functions together.

  BuildACell/subsbml#22 · Filter by author agrimadeedwania opened on Aug 4, 2020
  1

• mode = volume uses initialAmount attribute in subsbml, should be concentration

  BuildACell/subsbml#21 · Filter by author ayush9pandey opened on Aug 4, 2020

• setMembrane function changes the membrane Subsytem object passed to it

  BuildACell/subsbml#19 · Filter by author ayush9pandey opened on Jul 20, 2020

• Add **kwargs to getParameterByName function call in Sybsystem.py on line 258

  bug
  BuildACell/subsbml#16 · Filter by author jianyihuang729 opened on Jun 8, 2020
  

• Success message when composed SBML file is created

  BuildACell/subsbml#8 · Filter by author ayush9pandey opened on Dec 5, 2018

• bioscrape is used extensively all over in examples and tutorials. Should be optional.

  BuildACell/subsbml#7 · Filter by author ayush9pandey opened on Dec 5, 2018

• Generalize the simulator warning. Also, check for RoadRunner installation.

  BuildACell/subsbml#6 · Filter by author ayush9pandey opened on Dec 5, 2018

• Introduce a new "quiet" mode in combineSubsystems/shareSubsystems etc.

  BuildACell/subsbml#5 · Filter by author ayush-pandey opened on Nov 29, 2018
  

• In setIdFromNames fix "xx" prefix when special characters used in names to something more standard.

  BuildACell/subsbml#4 · Filter by author ayush-pandey opened on Nov 28, 2018

• simpleModel.createNewParameter bugs when ListOfParameters has one element only

  BuildACell/subsbml#3 · Filter by author ayush-pandey opened on Nov 27, 2018