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ac093ed
Implementation of collapse function and first steps of spacing
Dec 14, 2025
a400cd9
Minor fix of Minimap (Stacked collapse bug fix)
Dec 15, 2025
4ca037c
Fixxed inconsitent managment on stacked collapse. Todo: watch line 1025.
Dec 19, 2025
f2fa682
Fixxed inconsitent managment on stacked collapse within the update of…
Dec 20, 2025
d31ace1
Wrote code little bit better and watch todo concerning collapse minim…
Jan 7, 2026
df164bf
Fixxed little bug concerning the minimap on collapse
Jan 7, 2026
a591f38
First steps to refresh button for compact collapse display. (Small im…
Feb 19, 2026
c432e3f
First steps to refresh button for compact collapse display. (Small de…
Feb 19, 2026
929852c
Mini update for the compact button.
Mar 4, 2026
cfbe1c7
Small preperation for the compact button.
Mar 9, 2026
02374b8
First steps into small rendering function after collapse...
Mar 11, 2026
8d13b40
Small test (not important) => TODO: Fix bugged state on compact mode.
Mar 11, 2026
fe2d1eb
Compact Mode implemented (TEST PHHASE - TEST ON ANY BUGS).
Mar 12, 2026
52fe425
Fixxed small bugs, including: stack collapse bug after compact button…
Mar 13, 2026
f819bce
Fixxed small bug, including: Wrong button implementation
Mar 13, 2026
1ab18ab
MINI UPDATE
Mar 13, 2026
c05b744
MINI UPDATE small bug fixxes
Mar 14, 2026
154c2aa
Fixxed some button overlapsing buggs also fixxed compact button wrong…
Mar 20, 2026
bde444b
Fixxed inconsitent compact button trigger requirment.
Mar 29, 2026
da52736
Fixxed Align/Attach lables bug for compact mode.
Mar 30, 2026
6f3eb87
Small code cleanup + brench lengths also now in compact mode enabled
Mar 30, 2026
89c1b68
Changed structure of hovering taxa display(view) & and inconsistent n…
Mar 31, 2026
c507419
Collapsing nodes function now available in compact mode.
Mar 31, 2026
febb166
Swapping of branches now available in compact mode (test phase)
Apr 1, 2026
c465c67
Hovering over collapsed taxa names now also available in compact mode…
Apr 2, 2026
edc7a5e
Improved hovering taxa function in compact mode. [!] => Fix the todo.
Apr 2, 2026
7f4418c
Mini fix.
Apr 2, 2026
a263b23
Fixxed hover bug through a workaround in draw_collapsed_line function.
Apr 2, 2026
5f075a0
Gramma change
Apr 2, 2026
ead8292
Fixxed wrong label display bug in compact mode while hovering.
Apr 3, 2026
1075692
Search function now available in compact mode.
Apr 3, 2026
76fdb71
Todo: Fix Bug in compact mode where Taxa is null.
Apr 19, 2026
9a8ce03
Right and left nodes now work in compact mode. Todo: fix bug with wro…
Apr 20, 2026
7d33fda
Fixxed inconsitent handling of hovering during compact mode
Apr 20, 2026
5ec6626
Fixxed minor bug including displaying wrong label text
Apr 28, 2026
791094d
Hotfix Nr 1: Hoverbug leading to crash fixxed.
May 9, 2026
1260640
Hotfix Nr 2: Stack collapse leading to crash fixxed.
May 9, 2026
83a7bed
Changed text info when trying to snapshot an existing tree.
May 11, 2026
4f4f313
Fixxed bug where tree file that should contain lengths didnt containe…
May 11, 2026
c8e09e9
Fixxed bug where collapse function was enabled at compact node even t…
May 13, 2026
1cdbbb3
Fixxed bug where collapse function was enabled at compact node even t…
May 14, 2026
5182736
Fixxed bug where ghost circle for leafes were drawn even tho they sho…
May 15, 2026
bb081aa
Updated Email in README.md
Jul 4, 2026
2cd8e1f
Updated Email in README.md. Small change
Jul 4, 2026
6243d2d
Updated Email in README.md. Small change [2]
Jul 4, 2026
91037cf
Todo message for future updates.
Jul 9, 2026
6e9595d
New version text
Jul 10, 2026
daa2df7
Update version.txt back to 1.3.12
Minzfrisch Jul 10, 2026
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2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -101,4 +101,4 @@ Any bug reports, comments and suggestions are highly appreciated. Please
An Application Note is in the works. Stay tuned.

# Contact
For further support or bug reports please contact us via [email](mailto:jeffgower98@gmail.com).
For further support or bug reports please contact us via [@Jeff](mailto:jeffgower98@gmail.com) or [@Adrian](mailto:faflow456456@gmail.com).
2 changes: 1 addition & 1 deletion matt/app.py
Original file line number Diff line number Diff line change
Expand Up @@ -153,7 +153,7 @@ def download(tree_id):
file_without.write(tree_without + "\n")
file_without.close()

tree_with = Tree(tree_lengths_json).to_newick()
tree_with = Tree(tree_lengths_json, enable_lengths=True).to_newick()
path_with = os.path.join(session["working-directory"],
(session["session-name"] + "_" if session["session-name"] else "") + "with_lengths.tree")
file_with = open(path_with, "w")
Expand Down
6 changes: 6 additions & 0 deletions matt/static/css.css
Original file line number Diff line number Diff line change
Expand Up @@ -103,6 +103,12 @@ html, body {
right: calc(15vw + 156px);
}

#compact-button {
position: absolute;
top: 10px;
right: calc(15vw + 203px);
}

#labels-button {
position: absolute;
top: 10px;
Expand Down
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