diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..d1b801f --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,92 @@ +# -------------------------------------------- +# CITATION file created with {cffr} R package +# See also: https://docs.ropensci.org/cffr/ +# -------------------------------------------- + +cff-version: 1.2.0 +message: 'To cite package "cBioPortalData" in publications use:' +type: software +license: AGPL-3.0-only +title: 'cBioPortalData: Exposes and Makes Available Data from the cBioPortal Web Resources' +version: 2.25.1 +doi: 10.1200/CCI.19.00119 +abstract: The cBioPortalData R package accesses study datasets from the cBio Cancer + Genomics Portal. It accesses the data either from the pre-packaged zip / tar files + or from the API interface that was recently implemented by the cBioPortal Data Team. + The package can provide data in either tabular format or with MultiAssayExperiment + object that uses familiar Bioconductor data representations. +authors: +- family-names: Waldron + given-names: Levi + email: lwaldron.research@gmail.com +- family-names: Ramos + given-names: Marcel + email: marcel.ramos@sph.cuny.edu + orcid: https://orcid.org/0000-0002-3242-0582 +preferred-citation: + type: article + title: Multiomic Integration of Public Oncology Databases in Bioconductor + authors: + - family-names: Ramos + given-names: Marcel + email: marcel.ramos@sph.cuny.edu + orcid: https://orcid.org/0000-0002-3242-0582 + - family-names: Geistlinger + given-names: Ludwig + - family-names: Oh + given-names: Sehyun + - family-names: Schiffer + given-names: Lucas + - family-names: Azhar + given-names: Rimsha + - family-names: Kodali + given-names: Hanish + - family-names: Bruijn + given-names: Ino + name-particle: de + - family-names: Gao + given-names: Jianjiong + - family-names: Carey + given-names: Vincent J. + - family-names: Morgan + given-names: Martin + - family-names: Waldron + given-names: Levi + email: lwaldron.research@gmail.com + journal: JCO Clinical Cancer Informatics + volume: '1' + issue: '4' + year: '2020' + doi: 10.1200/CCI.19.00119 + notes: 'PMID: 33119407' + url: https://ascopubs.org/doi/pdf/10.1200/CCI.19.00119 + start: 958-971 +repository: https://bioconductor.org/ +repository-code: https://github.com/waldronlab/cBioPortalData +url: https://github.com/waldronlab/cBioPortalData +date-released: '2026-02-23' +contact: +- family-names: Ramos + given-names: Marcel + email: marcel.ramos@sph.cuny.edu + orcid: https://orcid.org/0000-0002-3242-0582 +keywords: +- bioconductor-package +- nci-itcr +- u24ca289073 +references: +- type: manual + title: 'cBioPortalData: Exposes and Makes Available Data from the cBioPortal Web + Resources' + authors: + - family-names: Waldron + given-names: Levi + email: lwaldron.research@gmail.com + - family-names: Ramos + given-names: Marcel + email: marcel.ramos@sph.cuny.edu + orcid: https://orcid.org/0000-0002-3242-0582 + year: '2026' + notes: R package version 2.25.1 + url: https://github.com/waldronlab/cBioPortalData +