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Ben Jeffery
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Freeze deps
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‎.github/workflows/build.yml‎

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- name: Set up Python 3.8
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uses: actions/setup-python@v4
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with:
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python-version: 3.8
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python-version: "3.10"
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- name: Install python dependencies
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run: |
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# Downgrade pip to allow conflicting deps
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pip install pip==20.0.2
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pip install -r requirements.txt
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pip install --upgrade pip wheel
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cat requirements-CI.txt | sed -e '/^\s*#.*$/d' -e '/^\s*$/d' | xargs -n 1 pip install --no-dependencies
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- name: Install R support
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run: |

‎requirements-CI.txt‎

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alabaster==0.7.13
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anyio==3.6.2
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appdirs==1.4.4
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argon2-cffi==21.3.0
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argon2-cffi-bindings==21.2.0
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arrow==1.2.3
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asciitree==0.3.3
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asttokens==2.2.1
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attrs==21.4.0
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Babel==2.11.0
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backcall==0.2.0
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beautifulsoup4==4.11.1
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bleach==5.0.1
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certifi==2022.12.7
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cffi==1.15.1
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charset-normalizer==3.0.1
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click==8.1.3
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cloudpickle==2.2.1
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colorama==0.4.6
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comm==0.1.2
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contourpy==1.0.7
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cvxpy==1.3.0
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cycler==0.11.0
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dask==2023.1.0
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debugpy==1.6.5
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decorator==5.1.1
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defusedxml==0.7.1
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demes==0.2.2
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demesdraw==0.3.1
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DendroPy==4.5.2
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docutils==0.17.1
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ecos==2.0.12
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entrypoints==0.4
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executing==1.2.0
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fasteners==0.18
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fastjsonschema==2.16.2
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fonttools==4.38.0
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fqdn==1.5.1
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fsspec==2023.1.0
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gitdb==4.0.10
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GitPython==3.1.30
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greenlet==2.0.1
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humanize==4.4.0
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idna==3.4
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imagesize==1.4.1
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importlib-metadata==6.0.0
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ipykernel==6.20.2
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ipython==8.8.0
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ipython-genutils==0.2.0
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ipywidgets==7.7.2
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isoduration==20.11.0
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jedi==0.18.2
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Jinja2==3.1.2
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jsonpointer==2.3
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jsonschema==4.17.3
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jupyter-book==0.13.1
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jupyter-cache==0.4.3
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jupyter-events==0.6.3
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jupyter-server-mathjax==0.2.6
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jupyter-sphinx==0.3.2
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jupyter_client==7.4.9
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jupyter_core==5.1.3
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jupyter_server==2.1.0
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jupyter_server_terminals==0.4.4
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jupyterlab-pygments==0.2.2
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jupyterlab-widgets==1.1.1
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kiwisolver==1.4.4
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latexcodec==2.0.1
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linkify-it-py==1.0.3
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locket==1.0.0
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lxml==4.9.2
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markdown-it-py==1.1.0
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MarkupSafe==2.1.2
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matplotlib==3.6.3
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matplotlib-inline==0.1.6
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mdit-py-plugins==0.2.8
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mistune==0.8.4
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msprime==1.2.0
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myst-nb==0.13.2
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myst-parser==0.15.2
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nbclassic==0.4.8
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nbclient==0.5.13
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nbconvert==6.5.4
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nbdime==3.1.1
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nbformat==5.7.3
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nest-asyncio==1.5.6
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networkx==3.0
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newick==1.6.0
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notebook==6.5.2
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notebook_shim==0.2.2
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numcodecs==0.11.0
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numpy==1.24.1
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osqp==0.6.2.post8
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packaging==23.0
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pandas==1.5.3
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pandocfilters==1.5.0
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parso==0.8.3
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partd==1.3.0
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pexpect==4.8.0
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pickleshare==0.7.5
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Pillow==9.4.0
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platformdirs==2.6.2
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prometheus-client==0.15.0
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prompt-toolkit==3.0.36
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psutil==5.9.4
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ptyprocess==0.7.0
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pure-eval==0.2.2
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pybtex==0.24.0
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pybtex-docutils==1.0.2
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pycparser==2.21
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pydata-sphinx-theme==0.8.1
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Pygments==2.14.0
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pyparsing==3.0.9
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pyrsistent==0.19.3
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pyslim==1.0.1
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python-dateutil==2.8.2
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python-json-logger==2.0.4
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pytz==2022.7.1
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PyYAML==6.0
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pyzmq==25.0.0
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qdldl==0.1.5.post3
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requests==2.28.2
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rfc3339-validator==0.1.4
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rfc3986-validator==0.1.1
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ruamel.yaml==0.17.21
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ruamel.yaml.clib==0.2.7
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scikit-allel==1.3.5
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scipy==1.10.0
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scs==3.2.2
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Send2Trash==1.8.0
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six==1.16.0
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smmap==5.0.0
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sniffio==1.3.0
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snowballstemmer==2.2.0
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soupsieve==2.3.2.post1
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Sphinx==4.5.0
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sphinx-book-theme==0.3.3
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sphinx-comments==0.0.3
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sphinx-copybutton==0.5.1
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sphinx-external-toc==0.2.4
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sphinx-jupyterbook-latex==0.4.7
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sphinx-multitoc-numbering==0.1.3
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sphinx-thebe==0.1.2
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sphinx-togglebutton==0.3.2
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sphinx_design==0.1.0
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sphinxcontrib-applehelp==1.0.4
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sphinxcontrib-bibtex==2.5.0
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sphinxcontrib-devhelp==1.0.2
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sphinxcontrib-htmlhelp==2.0.0
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sphinxcontrib-jsmath==1.0.1
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sphinxcontrib-qthelp==1.0.3
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sphinxcontrib-serializinghtml==1.1.5
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SQLAlchemy==1.4.46
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stack-data==0.6.2
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stdpopsim==0.2.0
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svgwrite==1.4.3
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terminado==0.17.1
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tinycss2==1.2.1
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toolz==0.12.0
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tornado==6.2
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tqdm==4.64.1
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traitlets==5.8.1
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git+https://github.com/tskit-dev/tsconvert@e99c837e4e26ccbf4f480a4c48626338eeff7dc3
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tskit==0.5.4
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tskit-book-theme==0.3.2
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tszip==0.2.2
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uc-micro-py==1.0.1
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uri-template==1.2.0
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urllib3==1.26.14
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wcwidth==0.2.6
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webcolors==1.12
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webencodings==0.5.1
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websocket-client==1.4.2
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widgetsnbextension==3.6.1
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zarr==2.13.6
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zipp==3.11.0

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