Use myst to build this thing.

Author: arokem

make.bat

@@ -1 +1,3 @@
-sphinx
+sphinx
+myst-parser
+pydata_sphinx_theme

requirements.txt

@@ -13,15 +13,16 @@
 # -- General configuration ---------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
 
-extensions = []
+extensions = [
+    "myst_parser",
+    ]
 
 templates_path = ['_templates']
-exclude_patterns = []
-
-
+exclude_patterns = ['.DS_Store']
+source_suffix = ['.rst', '.md']
 
 # -- Options for HTML output -------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
 
-html_theme = 'alabaster'
+html_theme = 'pydata_sphinx_theme'
 html_static_path = ['_static']

source/conf.py

@@ -0,0 +1,17 @@
+# Tractometry
+
+## Projects
+
+[*pyAFQ*](https://tractometry.org/pyAFQ): Automated Fiber Quantification in Python
+[*AFQ-Insight*](https://tractometry.org/AFQ-Insight): Machine learning and statistics for tractomtery.
+[*Tractable*](https://tractometry.org/tractable): R-based statistical analysis of tractometry.
+[*AFQ-Browser*](https://tractometry.org/AFQ-Browser): Interactive exploratory visualization and sharing of tractometry studies.
+[*Tractoscope*](https://tractometry.org/tractoscope): Visualization of large openly-available tractometry studies.
+
+```{eval-rst}
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+```