Issues

how to understand “left-align indels”
tkzeng/Pangolin#37 · opened on Aug 14, 2025
Max value for argument --distance
tkzeng/Pangolin#36 · opened on Apr 10, 2025
Segmentation fault (core dumped)
tkzeng/Pangolin#35 · opened on Mar 23, 2025
Query: does result vary between whole and split vcf?
tkzeng/Pangolin#34 · opened on Feb 23, 2025
WARNING, skipping variant
tkzeng/Pangolin#32 · opened on Dec 25, 2024
1
a downloadble database version
tkzeng/Pangolin#31 · opened on Dec 12, 2024
Pangolin sometimes masks gain scores where there are no splice sites annotated on the gene
tkzeng/Pangolin#29 · opened on Nov 8, 2024
pangolin custom usage script output
tkzeng/Pangolin#28 · opened on Jul 28, 2024
1
Pangolin exits with error if variant with wildcard character
tkzeng/Pangolin#26 · opened on Jul 24, 2024
1
WARNING, skipping variant: Variant not contained in a gene body. Do GTF/FASTA chromosome names match?
tkzeng/Pangolin#25 · opened on Jul 1, 2024
Inconsistency of predictions depending on batch size
tkzeng/Pangolin#22 · opened on May 22, 2024
System/server configuration recommendation for running WGS sample with Pangolin
tkzeng/Pangolin#20 · opened on Apr 4, 2024
error while running the pangolin script
tkzeng/Pangolin#17 · opened on Feb 26, 2024
Suggestion for alternative output/VEP plugin?
tkzeng/Pangolin#16 · opened on Feb 12, 2024
1
Minscores & Maxscores value?
tkzeng/Pangolin#15 · opened on Feb 9, 2024
Dependency Versions
tkzeng/Pangolin#14 · opened on Aug 30, 2023
Reference genome mismatch due to lowercase sequence
tkzeng/Pangolin#12 · opened on Jun 7, 2023
1
Possible to provide an hg38 genome wide score file?
tkzeng/Pangolin#11 · opened on May 25, 2023
1
Could pangolin predict the splice site ab initio?
tkzeng/Pangolin#10 · opened on Mar 25, 2023
1
missing 1 required positional argument: 'type_code'
tkzeng/Pangolin#7 · opened on Aug 31, 2022
5
Prediction of 5'ss usage and 3'ss usage
tkzeng/Pangolin#6 · opened on Aug 3, 2022
1