Merge branch 'feature' of https://github.com/terraref/reference-data into feature

Author: Nick Heyek

experiment-trait-data-visualizer/README.md

@@ -3,9 +3,9 @@
 #### Time series box, line plots and heatmaps for every available season
 
 #### Dependencies
+
 - shiny
 - shinythemes
-- tools
 - lubridate
 - dplyr
 - ggplot2
@@ -18,6 +18,7 @@
 #### BETYdb remote access uses ssh tunnel: ssh -Nf -L 5432:localhost:5432 bety6.ncsa.illinois.edu
 #### [Request access](https://identity.ncsa.illinois.edu/join/TU49BUUEDM)
 #### Set the following environment variables
+
 - bety_dbname ('bety')
 - bety_password
 - bety_host ('localhost')

experiment-trait-data-visualizer/cache-refresh.R

@@ -4,13 +4,18 @@ library(lubridate)
 options(scipen=999)
 
 # set up remote connection to BETYdb
-bety_src <- src_postgres(
-  dbname = Sys.getenv('bety_dbname'),
-  password = Sys.getenv('bety_password'),
-  host = Sys.getenv('bety_host'),
-  port = Sys.getenv('bety_port'),
-  user = Sys.getenv('bety_user')
-)
+# bety_src <- src_postgres(
+#   dbname = Sys.getenv('bety_dbname'),
+#   password = Sys.getenv('bety_password'),
+#   host = Sys.getenv('bety_host'),
+#   port = Sys.getenv('bety_port'),
+#   user = Sys.getenv('bety_user')
+# )
+bety_src <- src_postgres(dbname = "bety", 
+                         password = 'bety', 
+                         host = 'terra-bety.default', 
+                         user = 'bety', 
+                         port = 5432)
 
 # get all relevant data from BETYdb for a given season, write to cache file
 get_data_for_season <- function(season) {