improvement(naming): standardize file names to the folder and role conventions

Renames every check:file-names baseline entry (stutter and redundant-suffix) so the
baseline is empty, plus the same rule's uncaught cases: grandparent-domain prefixes in
application/ and orchestration/ folders, loose stores moved to stores/<feature>/store.ts,
non-hook files dropped from the use-* prefix, and application context/errors outliers.

Author: waleedlatif1

.agents/skills/add-block/SKILL.md

@@ -350,7 +350,7 @@ sourceIds.forEach((id) => delete params[id])   // subblock ids are deleted
 if (chosen !== undefined) params[group.canonicalId] = chosen
 ```
 
-So by the time `tools.config.params(inputs)` runs (`executor/handlers/generic/generic-handler.ts`),
+So by the time `tools.config.params(inputs)` runs (`executor/handlers/generic/handler.ts`),
 `params.uploadFile` and `params.fileRef` are **gone** and the value is under `params.file`. Reading a
 subblock id there yields `undefined` and silently sends no file.
 
@@ -359,7 +359,7 @@ and the first non-empty advanced value in advanced mode, so a stale value in the
 never leak. `normalizeFileInput` then handles the JSON string that advanced-mode template resolution
 produces.
 
-Note that `generic-handler` merges rather than replaces (`{ ...inputs, ...transformedParams }`), so
+Note that `generic/handler` merges rather than replaces (`{ ...inputs, ...transformedParams }`), so
 omitting a key from the returned object does not strip it from what the tool receives. Tools simply
 ignore params they do not declare.
 

.agents/skills/add-integration/SKILL.md

@@ -657,8 +657,8 @@ File Downloads and Generated Files.
 | Helper | Location | Purpose |
 |--------|----------|---------|
 | `normalizeFileInput` | `@/blocks/utils` | Normalize file params in block config |
-| `processFilesToUserFiles` | `@/lib/uploads/utils/file-utils` | Convert raw inputs to UserFile[] |
-| `downloadFileFromStorage` | `@/lib/uploads/utils/file-utils.server` | Get file Buffer from UserFile |
+| `processFilesToUserFiles` | `@/lib/uploads/utils/file` | Convert raw inputs to UserFile[] |
+| `downloadFileFromStorage` | `@/lib/uploads/utils/file.server` | Get file Buffer from UserFile |
 | `FileToolProcessor` | `@/executor/utils/file-tool-processor` | Executor-side; stores declared file outputs (not called by tools) |
 | `isUserFile` | `@/lib/core/utils/user-file` | Type guard for UserFile objects |
 | `FileInputSchema` | `@/lib/uploads/utils/file-schemas` | Zod schema for file validation |

.agents/skills/migrate-application-operation/SKILL.md

@@ -47,7 +47,7 @@ Read these files completely before editing:
 - `apps/sim/lib/api/server/routes/internal-json-route.ts`
 - `apps/sim/lib/api/server/routes/v2-json-route.ts`
 - `apps/sim/lib/auth/internal-delegation.ts`
-- `apps/sim/lib/mothership/application/application-adapter.ts`
+- `apps/sim/lib/mothership/application/adapter.ts`
 - `apps/sim/lib/mothership/auth/application-delegation.ts`
 
 Use the file domain only as a representative golden slice:

apps/sim/app/(auth)/login/login-form.tsx

@@ -15,7 +15,7 @@ import { normalizeEmail } from '@sim/utils/string'
 import { useRouter, useSearchParams } from 'next/navigation'
 import { requestJson } from '@/lib/api/client/request'
 import { forgetPasswordContract } from '@/lib/api/contracts'
-import { client } from '@/lib/auth/auth-client'
+import { client } from '@/lib/auth/client'
 import { getEnv, isFalsy } from '@/lib/core/config/env'
 import { isSsoEnabled } from '@/lib/core/config/env-flags'
 import { validateCallbackUrl } from '@/lib/core/security/input-validation'

apps/sim/app/(auth)/oauth/consent/consent-view.test.tsx

@@ -7,7 +7,7 @@ import { QueryClient, QueryClientProvider } from '@tanstack/react-query'
 import { createRoot, type Root } from 'react-dom/client'
 import { afterEach, beforeEach, describe, expect, it, vi } from 'vitest'
 
-vi.mock('@/lib/auth/auth-client', () => authClientMock)
+vi.mock('@/lib/auth/client', () => authClientMock)
 
 import { OAuthConsentView } from '@/app/(auth)/oauth/consent/consent-view'
 import { oauthProviderKeys } from '@/hooks/queries/oauth-provider'

apps/sim/app/(auth)/signup/signup-form.tsx

@@ -7,7 +7,7 @@ import { useRouter, useSearchParams } from 'next/navigation'
 import { usePostHog } from 'posthog-js/react'
 import { trackFreebuffConversion } from '@/lib/analytics/freebuff'
 import { trackGoogleEvent } from '@/lib/analytics/google'
-import { client, useSession } from '@/lib/auth/auth-client'
+import { client, useSession } from '@/lib/auth/client'
 import { useTrackingConsent } from '@/lib/consent/tracking-consent'
 import { getEnv, isFalsy } from '@/lib/core/config/env'
 import { isSsoEnabled } from '@/lib/core/config/env-flags'

apps/sim/app/(auth)/verify/use-verification.test.tsx

@@ -6,7 +6,7 @@ import { nextNavigationMock } from '@sim/testing/mocks/next-navigation.mock'
 import { createRoot, type Root } from 'react-dom/client'
 import { afterEach, beforeEach, describe, expect, it, vi } from 'vitest'
 
-vi.mock('@/lib/auth/auth-client', () => authClientMock)
+vi.mock('@/lib/auth/client', () => authClientMock)
 vi.mock('next/navigation', () => nextNavigationMock)
 
 import { useVerification } from '@/app/(auth)/verify/use-verification'

apps/sim/app/(auth)/verify/use-verification.ts

@@ -4,7 +4,7 @@ import { useEffect, useState } from 'react'
 import { createLogger } from '@sim/logger'
 import { normalizeEmail } from '@sim/utils/string'
 import { useSearchParams } from 'next/navigation'
-import { client, useSession } from '@/lib/auth/auth-client'
+import { client, useSession } from '@/lib/auth/client'
 import { SSO_REQUIRED_ERROR_CODE } from '@/lib/auth/constants'
 import { validateCallbackUrl } from '@/lib/core/security/input-validation'
 import { DEFAULT_POST_AUTH_ROUTE, POST_AUTH_REDIRECT_STORAGE_KEY } from '@/app/(auth)/auth-redirect'

apps/sim/app/(interfaces)/chat/components/message/components/file-download.tsx

@@ -8,7 +8,7 @@ import { sleep } from '@sim/utils/helpers'
 import { getDocumentIcon } from '@/components/icons/document-icons'
 import { isSafeHttpUrl } from '@/lib/core/utils/urls'
 import { saveBlob } from '@/lib/uploads/client/download'
-import { tryInferContextFromKey } from '@/lib/uploads/utils/file-utils'
+import { tryInferContextFromKey } from '@/lib/uploads/utils/file'
 import type { ChatFile } from '@/app/(interfaces)/chat/components/message/message'
 
 const logger = createLogger('ChatFileDownload')

apps/sim/app/(landing)/components/hero/components/hero-chat-loop/hero-tool-call-item.tsx

@@ -1,10 +1,7 @@
 import { Table } from '@sim/emcn/icons'
 import { SlackIcon } from '@/components/icons'
 import { ActivityStatus } from '@/components/ui/activity-status'
-import {
-  getToolInProgressTitle,
-  getToolStatusDisplayTitle,
-} from '@/lib/mothership/tools/tool-display'
+import { getToolInProgressTitle, getToolStatusDisplayTitle } from '@/lib/mothership/tools/display'
 import type {
   ToolActivityPresentation,
   ToolCallItemProps,