diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 37d5da9..fcb375f 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: 94dfd97e59f6fcc5abec3bf328ed6108a82fa760  # frozen: v2.5.7
+    rev: 3e8b293b5e343b39246e76fed741691f0206b3d4  # frozen: v2.5.8
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: b82a24a520c5d496cb7b23b4e9b63537c280f51b  # frozen: v2.27.0
+    rev: 67cd950188cc8e2611e9ac21d1b032fdd446c601  # frozen: v2.28.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 7c55798a78262d14b2074abf623d8a992ebb70d4  # frozen: v0.16.2
+    rev: 65dbdb59d2f2d9c3bdc343c566821ad3319ddaa3  # frozen: v0.16.3
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]
diff --git a/pyproject.toml b/pyproject.toml
index 330e0fa..2b7ac3d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -157,11 +157,11 @@ strict = true
 testpaths = [ "tests" ]
 
 [tool.coverage]
+run.source = [ "mudata" ]
 run.omit = [
   "**/test_*.py",
 ]
 run.patch = [ "subprocess" ]
-run.source = [ "mudata" ]
 
 [tool.cruft]
 skip = [